- FILM-Users - imperial.ac.uk

[FILM-Users 00574] FW: Position for Image Analysis at the MPI for Biochemistry, Munich
by Keller, Debora 16 Jun '15

16 Jun '15

Dear Users, See below an opportunity to work with Martin Spitaler at the Max Planck for Biochemistry in Munich :-) Cheers Debbi From: Spitaler, Martin Sent: 16 June 2015 11:23 To: 'Confocal Microscopy List' Subject: Position for Image Analysis at the MPI for Biochemistry, Munich Dear all, I’m excited to announce the opening of a staff scientist position for an Image Analyst in the Imaging Facility of the Max Planck Institute of Biochemistry in Martinsried / Munich. This is a very attractive opportunity for anyone with solid experience in biological image analysis, to work in a lively scientific environment in a top institute at an attractive location, both with regard to science (Martinsried Campus, one of the largest for life sciences in Europe) and quality of life. For more details see the online advert (http://www.biochem.mpg.de/5031150/job_full_offer_9265538?c=1384782) or email me (spitaler(a)biochem.mpg.de<mailto:spitaler@biochem.mpg.de>). Best, Martin ________________________________ Martin Spitaler, PhD Imaging Facility (Facility Manager) Max Planck Institute of Biochemistry Am Klopferspitz 18 82152 Martinsried / Munich Germany Tel: +49 (0)89 8578-3971 E-mail: spitaler(a)biochem.mpg.de<mailto:spitaler@biochem.mpg.de> Website: http://www.biochem.mpg.de/en/facilities/imaging

1 0

[FILM-Users 00573] FYI: Job advert medical imaging & image analysis in imanova
by Keller, Debora 10 Jun '15

10 Jun '15

Dear users, Attached a job-advert at imanova that could be of interest. Best, Debbi From: Naoko Masumoto [mailto:Naoko.Masumoto@imanova.co.uk] Sent: 04 June 2015 15:19 To: Keller, Debora Subject: Job advert to pass on to you Hi Debbi, Hope you are well and enjoying the nice weather! I just wanted to say hi to you as well as asking whether you know someone suitable for this job which Imanova is offering. If possible, could you please forward/distribute the job advert for me? Hope to see you some time. Many thanks, Naoko [http://www.imanova.co.uk/media/img/logo.png]<http://www.imanova.co.uk/> Imanova Limited Burlington Danes Building, Imperial College London, Hammersmith Hospital, Du Cane Road, London, W12 0NN, UK www.imanova.co.uk<http://www.imanova.co.uk> Tel: +44 (0)20 8008 6000 The contents of this e-mail are confidential and are solely for the intended recipient. If you have received it by mistake, please let us know by reply and delete it from your system. [http://www.imanova.co.uk/images/general-site-imgs/twitter-24.png]<https://twitter.com/imanovaimaging> [http://www.imanova.co.uk/images/general-site-imgs/linkedin-24.png] <https://www.linkedin.com/company/2625472> P Please consider the environment before printing this e-mail.

1 0

[FILM-Users 00572] You're invited to FILM Microscopy Day 2015 (23 Jun 2015)
by Facility for Imaging by Light Microscopy (FILM) Imperial College London 08 Jun '15

08 Jun '15

We are happy to invite you to the 2015 FILM Microscopy DayThe morning session you will be able to remember the "basics" with presentations from Martin Spitaler (former-FILM manager) on fluorophores and how they work, and the basics of microscopy by Nicolas Olivier (KCL) before moving on to super-resolution microscopy (Debbi, FILM).We will again host our famous "Microscopy Match Maker" where users can present snapshots of their research and, who knows, discover new avenues for collaboration within or outside Imperial! Register for your Match-maker spot!The afternoon will focus on more advanced technique, in particular high-content imaging and analysis with presentations from Nick Barry (MRC-LMB, Cambridge) and Chris Dunsby (Imperial) on high-content FLIM.Finally, we are delighted to host Willy Supatto from Ecole Polytechnique Paris as our plenary speaker who will present his work on two-photon lightsheet imaging and its applications to neurosciences and developmental biology.The plenary lecture will be followed by drinks.We ask those who plan to attend the entire event to register before 15/06 for catering purposes - if you only plan to attend the afternoon, let register as "afternoon only".We encourage staff and students to register for the match-maker - it is always fun! We hope you can make it.Cheers,Facility for Imaging by Light Microscopy (FILM) Imperial College LondonShare this event on Facebook and Twitter ------------------------------ Event Summary: ------------------------------ Event: FILM Microscopy Day 2015 Date: Tuesday, 23 June 2015 from 10:00 to 18:30 (BST) Location: Imperial College London Sir Alexander Fleming Building SW72AZ London United Kingdom ------------------------------ Event Details: ------------------------------ Programme Morning Session 10.00-10.15 Welcome & latest FILM news – Tony Magee 10.15-11.00 “Fluorophores – interface to the molecular world” - M.Spitaler (MPI for biochemistry, Martinsried) 11.00 -11.30 Basics of microscopy - N. Olivier (EBN, King's College London) 11.30-11.45 coffee & tea break 11.45-12.30 Super-resolution Microscopy (D. Keller, FILM) 12.45-13.30 Microscopy Match-Maker: 13.30-14.30 sandwich lunch Afternoon Session: 14.30-15.00 Conditional and high-content imaging - N. Barry (MRC-LMB, Cambridge) 15:00 -15.45 “Multi-dimensional fluorescence imaging for cell biology and high content analysis” - C. Dunsby (Photonics, Imperial College) 15.45-16.00 coffee & tea break Plenary Lecture 16.00-17.00 "Two-photon light-sheet microscopy in neuroscience ans developmental biology" - Willy Supatto Laboratory for Optics & Biosciences - Ecole Polytechnique - CNRS, Palaiseau, France 17.00-17.10 Tony Magee: Round-up 17.10-18.30 Refreshments (foyer) ------------------------------ Hosted By: ------------------------------ Facility for Imaging by Light Microscopy (FILM) Imperial College London Have questions about FILM Microscopy Day 2015? Contact Debora Keller ------------------------------ Register Online: ------------------------------ More information and online registration are available here: https://www.eventbrite.co.uk/e/film-microscopy-day-2015-tickets-17306622574… ---------------------------------------------------------------------- Collect event fees online with Eventbrite http://www.eventbrite.com

1 0

[FILM-Users 00571] Downtime Huygens Definiens Omero server FRIDAY 5th
by Keller, Debora 04 Jun '15

04 Jun '15

Dear Users, The BSS will perform server maintenance this Friday which means that you will not be able to access the Huygens, Omero and Definiens server. All will be back to normal from saturdayy. Best, Debbi Debora Keller, PhD FILM - Facility for Imaging by Light Microscopy - Facility Manager - Super-Resolution Specialist - Sir Alexander Fleming Building, desk 408 Imperial College London / South Kensington Exhibition Road London SW7 2AZ, UK Phone: +44 (0)207 594 2023 Mobile: + 44(0) 7760 256 889 E-mail: d.keller(a)imperial.ac.uk<mailto:d.keller@imperial.ac.uk> Website: http://imperial.ac.uk/imagingfacility

1 0

[FILM-Users 00570] Reminder: THIS week demo Zeiss Cell Observer widefield
by Keller, Debora 01 Jun '15

01 Jun '15

Just a small reminder please register for the demo: slots from Tomorrow to Friday (see below). Zeiss are bringing a new version of ZEN, it would be worth even for HWF1 users to test it out :) Cheers Debbi Dear Users. We will have our last demo next week from Tuesday June 2nd to Friday June 5th. As before, the registration excel sheet is on \\film-nas.med.ic.ac.uk\scratch\_HCS demo<file:///\\film-nas.med.ic.ac.uk\scratch\_HCS%20demo> REGISTER to demo with your samples :) Some of you will be familiar with the Zeiss system as it is very similar to the Hammersmith HWF1 widefield. The Cell Observer system is based on a Axio Observer.Z1 inverted microscope and comprises: - with motorised focus; Definite Focus for focus hold system; - Motorised X,Y stage with inserts for slides, dishes and well plates; - LED light source with LEDs and filters for the range of dyes we discussed previously plus a metal halide system for additional wavelength selection; - Incubation chamber for sample temperature maintenance; - a range of objectives - both high NA for maximum quality plus some long working distance objectives for use with thicker plastic vessels. - ZEN imaging workstation with a Hamamatsu Orca FLASH 4 camera & we will be able to show the functionality of ZEN for feedback experiments. The software should also enables setting up different acquisition parameters as well as segmentation feedback into the acquisiont. I would strongly encourage you to come with your samples and test the system! It is the last one! :) If there are any questions, please let me know! Cheers Debbi Debora Keller, PhD FILM - Facility for Imaging by Light Microscopy - Facility Manager - Super-Resolution Specialist - Sir Alexander Fleming Building, desk 408 Imperial College London / South Kensington Exhibition Road London SW7 2AZ, UK Phone: +44 (0)207 594 2023 Mobile: + 44(0) 7760 256 889 E-mail: d.keller(a)imperial.ac.uk<mailto:d.keller@imperial.ac.uk> Website: http://imperial.ac.uk/imagingfacility

1 0

[FILM-Users 00569] NEXT WEEK: demo Zeiss Cell Observer widefield
by Keller, Debora 28 May '15

28 May '15

Dear Users. We will have our last demo next week from Tuesday June 2nd to Friday June 5th. As before, the registration excel sheet is on \\film-nas.med.ic.ac.uk\scratch\_HCS demo<file:///\\film-nas.med.ic.ac.uk\scratch\_HCS%20demo> REGISTER to demo with your samples :) Some of you will be familiar with the Zeiss system as it is very similar to the Hammersmith HWF1 widefield. The Cell Observer system is based on a Axio Observer.Z1 inverted microscope and comprises: - with motorised focus; Definite Focus for focus hold system; - Motorised X,Y stage with inserts for slides, dishes and well plates; - LED light source with LEDs and filters for the range of dyes we discussed previously plus a metal halide system for additional wavelength selection; - Incubation chamber for sample temperature maintenance; - a range of objectives - both high NA for maximum quality plus some long working distance objectives for use with thicker plastic vessels. - ZEN imaging workstation with a Hamamatsu Orca FLASH 4 camera & we will be able to show the functionality of ZEN for feedback experiments. The software should also enables setting up different acquisition parameters as well as segmentation feedback into the acquisiont. I would strongly encourage you to come with your samples and test the system! It is the last one! :) If there are any questions, please let me know! Cheers Debbi Debora Keller, PhD FILM - Facility for Imaging by Light Microscopy - Facility Manager - Super-Resolution Specialist - Sir Alexander Fleming Building, desk 408 Imperial College London / South Kensington Exhibition Road London SW7 2AZ, UK Phone: +44 (0)207 594 2023 Mobile: + 44(0) 7760 256 889 E-mail: d.keller(a)imperial.ac.uk<mailto:d.keller@imperial.ac.uk> Website: http://imperial.ac.uk/imagingfacility

1 0

[FILM-Users 00568] Microscopy Day 2015: Save the date!!
by Keller, Debora 20 May '15

20 May '15

Dear FILM-users, I am happy to inform you that the 2015 Microscopy Day will take place on Tuesday 23rd of June from 10am - 5pm in G34 (SAF-SK). Mark it in your calendar! Details about the program will follow shortly, but confirmed speakers include Nick Barry (LMB Cambridge) on conditional high-content imaging and plenary speaker Willy Supatto (LOB Ecole Polytechnique, Paris) on multiphoton SPIM imaging! And because there is plenty of good science happening at Imperial as well, we will again have the famous Microscopy Matchmaker Session, where you can present in 3 min the microscopy you are doing for your project! Many collaborations have originated from this match-making, and it is a great opportunity to learn what is going on around you. Send me an email if you want to participate to this session! So, save the date and see you there! Cheers Debbi Debora Keller, PhD FILM - Facility for Imaging by Light Microscopy - Facility Manager - Super-Resolution Specialist - Sir Alexander Fleming Building, desk 408 Imperial College London / South Kensington Exhibition Road London SW7 2AZ, UK Phone: +44 (0)207 594 2023 Mobile: + 44(0) 7760 256 889 E-mail: d.keller(a)imperial.ac.uk<mailto:d.keller@imperial.ac.uk> Website: http://imperial.ac.uk/imagingfacility

1 0

[FILM-Users 00567] FYI: ImageJ workshops 20 and 21 July, Leicester, UK
by Keller, Debora 12 May '15

12 May '15

For those of you that would be interested in creating your own beautiful Fiji macros, see below the workshop in Leicester. From: UK Euro-BioImaging discussion list [mailto:UK-EUROBIOIMAGING-PROJECT@JISCMAIL.AC.UK] On Behalf Of Alex Sossick Sent: 12 May 2015 08:55 To: UK-EUROBIOIMAGING-PROJECT(a)JISCMAIL.AC.UK Subject: ImageJ workshops 20 and 21 July, Leicester, UK Dear List members, The next ImageJ/Fiji workshops in Leicester will be 'introduction to ImageJ/Fiji' on Monday 20 July and 'macro writing' on Tuesday 21 July 2015. The workshops are a mixture of lectures and hands-on sessions. No prior knowledge of ImageJ, Fiji or macro coding is required. For further information and application form please visit: http://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/lite/…. Best wishes Kees Dr Ir K.R. Straatman Senior Experimental Officer Centre for Core Biotechnology Services University of Leicester http://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/lite/… -- UK-EUROBIOIMAGING Visit the website http://www.bioimaginguk.org To e-mail the group, send messages to UK-EUROBIOIMAGING-PROJECT(a)JISCMAIL.AC.UK<mailto:UK-EUROBIOIMAGING-PROJECT@JISCMAIL.AC.UK> To subscribe visit https://www.jiscmail.ac.uk/cgi-bin/webadmin?A0=UK-EUROBIOIMAGING-PROJECT --

1 0

[FILM-Users 00566] IMPORTANT: Health & Safety issue at FILM
by Keller, Debora 11 May '15

11 May '15

Dear Users, This message is relevant to ALL users. This morning when emptying the regular trash in the confocal rooms (meant for lens tissue, paper, normal tissue, etc), I made the discovery of gloves, a full set of slides, with mounting medium leaking everywhere (see attached pictures), and to top it off a series of glass coverslips in the CF4 trash bin. As all the microscopy room are equipped with specific sharps bins and specific biological waste bins, I must assume that the person who trashed those items was too lazy to take the 3-4 steps to the appropriate bins or did not care. This behaviour is not tolerable and consists a serious health & safety issue: - I could have cut myself, not knowing there were slides in the regular trash; I would had to report it to H&S, have it examined, make sure there was nothing toxic in it (DAPI in mounting medium is a DNA-intercalating dye), fill out mountains of paper-work preventing me to attend to the daily work of the facility. - the cleaner who empties the bin could have cut him/herself, and this could have led to a legal issue for the college in addition to some distress for the person (it has happened in the past). This can not happen again. So here a reminder of H&S rules: - All FILM rooms are biological safety level 1 rooms, the same as your labs. It implies no eating or drinking in there, and separation of biological and non-biological waste, which should be standard lab practice. If you are unsure about good lab practice, ask your lab manager. - For lens paper, tissue, paper, etc use the regular trash bin (brown ones) - For gloves, tissue that was in contact with biological or chemical material, left over mounting medium, multi-well plates, plastic Pasteur pipettes use the orange biological bin (no liquid in it please). If your multi-well plates still have media in it, take it back to your lab to dispose of the liquid appropriately - liquid is not meant for the orange plastic bags. - For pipette tips, slides, ibidi dishes, glass coverslips use the yellow/orange sharps plastic container. It is made of "solid" plastic that won't be perforated by sharps, unlike the orange plastic bags. - If you don't know where the bins are or are unsure where you have to trash your item, or you find something is missing, come and ask us! I hope I won't have to write this message again and that the person responsible for the mess on the CF4 bin will take better care and come forward so we can go over the Health & Safety regulations of the Facility with him/her. Best wishes, Debora Debora Keller, PhD FILM - Facility for Imaging by Light Microscopy - Facility Manager - Super-Resolution Specialist - Sir Alexander Fleming Building, desk 408 Imperial College London / South Kensington Exhibition Road London SW7 2AZ, UK Phone: +44 (0)207 594 2023 Mobile: + 44(0) 7760 256 889 E-mail: d.keller(a)imperial.ac.uk<mailto:d.keller@imperial.ac.uk> Website: http://imperial.ac.uk/imagingfacility

1 0

[FILM-Users 00565] Image Xpress demo NEXT WEEK - book your slot
by Keller, Debora 08 May '15

08 May '15

Dear Users, We will be demoing the Image Xpress Micro<http://www.moleculardevices.com/systems/high-content-imaging/imagexpress-mi…> high-content system from Molecular Devices next week, with available slots from Tuesday 12th May at 9:30 pm until Thursday 14th at 4pm The microscope has an environmental chamber (CO2, Temperature), so you can come with your live cells. It can accommodate plates and dishes and slides should be feasible as well. It is equipped with several extra long working distance lenses (4x - 60x) as well as phase contrast 10x and 20x. Though it is a widefield system, it has a "digital confocal mode" which is basically on-th-fly deconvolution to increase the signal-to-noise of your widefield images (just ask Steve for his favourite deconvolved WF images to get an idea). The software should also enables setting up different acquisition parameters as well as whole plate analysis and segmentation. I would strongly encourage you to come with your samples and test the system! A booking diary is available on Scratch, in the folder "_HCS demo" with the name "Image Xpress Demo Booking Diary". This is the fore-last demo, the last one will be the Zeiss widefield system on June 2nd-5th Looking forward to seeing you there! Best, Debbi Debora Keller, PhD FILM - Facility for Imaging by Light Microscopy - Facility Manager - Super-Resolution Specialist - Sir Alexander Fleming Building, desk 408 Imperial College London / South Kensington Exhibition Road London SW7 2AZ, UK Phone: +44 (0)207 594 2023 Mobile: + 44(0) 7760 256 889 E-mail: d.keller(a)imperial.ac.uk<mailto:d.keller@imperial.ac.uk> Website: http://imperial.ac.uk/imagingfacility

1 0