Dear Firedrakers, My laptop seems to have issues when the install script attempts to install eigen. What should I do to fix this? Thanks Will Error: =============================================================================== Trying to download hg://https://bitbucket.org/eigen/eigen/ for EIGEN =============================================================================== =============================================================================== Configuring EIGEN with cmake, this may take several minutes =============================================================================== ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error configuring EIGEN with cmake Could not execute "cd /tmp/pip-RTQ3Ml-build/arch-python-linux-x86_64/externalpackages/hg.eigen/build && /usr/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/usr/not-backed-up/firedrake/march/firedrake/lib/python2.7/site-packages/petsc -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="/usr/lib64/openmpi/bin/mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC -fstack-protector -g -O" -DCMAKE_CXX_COMPILER="/usr/lib64/openmpi/bin/mpicxx" -DCMAKE_CXX_FLAGS:STRING="-fstack-protector -g -O -fPIC" -DCMAKE_Fortran_COMPILER="/usr/lib64/openmpi/bin/mpif90" -DCMAKE_Fortran_FLAGS:STRING="-fPIC -ffree-line-length-0 -g -O" -DBUILD_SHARED_LIBS=on -DENABLE_OPENMP=OFF": -- The C compiler identification is GNU 4.4.7 -- The CXX compiler identification is GNU 4.4.7 -- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc -- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/lib64/openmpi/bin/mpicxx -- Check for working CXX compiler: /usr/lib64/openmpi/bin/mpicxx -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test standard_math_library_linked_to_automatically -- Performing Test standard_math_library_linked_to_automatically - Success -- Standard libraries to link to explicitly: none -- Performing Test COMPILER_SUPPORT_WERROR -- Performing Test COMPILER_SUPPORT_WERROR - Success -- Performing Test COMPILER_SUPPORT_pedantic -- Performing Test COMPILER_SUPPORT_pedantic - Success -- Performing Test COMPILER_SUPPORT_Wall -- Performing Test COMPILER_SUPPORT_Wall - Success -- Performing Test COMPILER_SUPPORT_Wextra -- Performing Test COMPILER_SUPPORT_Wextra - Success -- Performing Test COMPILER_SUPPORT_Wundef -- Performing Test COMPILER_SUPPORT_Wundef - Success -- Performing Test COMPILER_SUPPORT_Wcastalign -- Performing Test COMPILER_SUPPORT_Wcastalign - Success -- Performing Test COMPILER_SUPPORT_Wcharsubscripts -- Performing Test COMPILER_SUPPORT_Wcharsubscripts - Success -- Performing Test COMPILER_SUPPORT_Wnonvirtualdtor -- Performing Test COMPILER_SUPPORT_Wnonvirtualdtor - Success -- Performing Test COMPILER_SUPPORT_Wunusedlocaltypedefs -- Performing Test COMPILER_SUPPORT_Wunusedlocaltypedefs - Failed -- Performing Test COMPILER_SUPPORT_Wpointerarith -- Performing Test COMPILER_SUPPORT_Wpointerarith - Success -- Performing Test COMPILER_SUPPORT_Wwritestrings -- Performing Test COMPILER_SUPPORT_Wwritestrings - Success -- Performing Test COMPILER_SUPPORT_Wformatsecurity -- Performing Test COMPILER_SUPPORT_Wformatsecurity - Success -- Performing Test COMPILER_SUPPORT_Wshorten64to32 -- Performing Test COMPILER_SUPPORT_Wshorten64to32 - Failed -- Performing Test COMPILER_SUPPORT_Wlogicalop -- Performing Test COMPILER_SUPPORT_Wlogicalop - Success -- Performing Test COMPILER_SUPPORT_Wenumconversion -- Performing Test COMPILER_SUPPORT_Wenumconversion - Failed -- Performing Test COMPILER_SUPPORT_Wcpp11extensions -- Performing Test COMPILER_SUPPORT_Wcpp11extensions - Failed -- Performing Test COMPILER_SUPPORT_Wdoublepromotion -- Performing Test COMPILER_SUPPORT_Wdoublepromotion - Failed -- Performing Test COMPILER_SUPPORT_Wnopsabi -- Performing Test COMPILER_SUPPORT_Wnopsabi - Success -- Performing Test COMPILER_SUPPORT_Wnovariadicmacros -- Performing Test COMPILER_SUPPORT_Wnovariadicmacros - Success -- Performing Test COMPILER_SUPPORT_Wnolonglong -- Performing Test COMPILER_SUPPORT_Wnolonglong - Success -- Performing Test COMPILER_SUPPORT_fnochecknew -- Performing Test COMPILER_SUPPORT_fnochecknew - Success -- Performing Test COMPILER_SUPPORT_fnocommon -- Performing Test COMPILER_SUPPORT_fnocommon - Success -- Performing Test COMPILER_SUPPORT_fstrictaliasing -- Performing Test COMPILER_SUPPORT_fstrictaliasing - Success -- Performing Test COMPILER_SUPPORT_wd981 -- Performing Test COMPILER_SUPPORT_wd981 - Failed -- Performing Test COMPILER_SUPPORT_wd2304 -- Performing Test COMPILER_SUPPORT_wd2304 - Failed -- Performing Test COMPILER_SUPPORT_STRICTANSI -- Performing Test COMPILER_SUPPORT_STRICTANSI - Failed -- Performing Test COMPILER_SUPPORT_Qunusedarguments -- Performing Test COMPILER_SUPPORT_Qunusedarguments - Failed -- Performing Test COMPILER_SUPPORT_ansi -- Performing Test COMPILER_SUPPORT_ansi - Success -- Performing Test COMPILER_SUPPORT_OPENMP -- Performing Test COMPILER_SUPPORT_OPENMP - Success -- Performing Test EIGEN_COMPILER_SUPPORT_CPP11 -- Performing Test EIGEN_COMPILER_SUPPORT_CPP11 - Failed -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake-qt4 (found version "4.6.2") -- Performing Test EIGEN_COMPILER_SUPPORT_CXX11 -- Performing Test EIGEN_COMPILER_SUPPORT_CXX11 - Failed -- The Fortran compiler identification is GNU -- Check for working Fortran compiler: /usr/lib64/openmpi/bin/mpif90 -- Check for working Fortran compiler: /usr/lib64/openmpi/bin/mpif90 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/lib64/openmpi/bin/mpif90 supports Fortran 90 -- Checking whether /usr/lib64/openmpi/bin/mpif90 supports Fortran 90 -- yes -- Could NOT find CHOLMOD (missing: CHOLMOD_INCLUDES CHOLMOD_LIBRARIES) -- Could NOT find UMFPACK (missing: UMFPACK_INCLUDES UMFPACK_LIBRARIES) -- Could NOT find SUPERLU (missing: SUPERLU_INCLUDES SUPERLU_LIBRARIES SUPERLU_VERSION_OK) -- Could NOT find PASTIX (missing: PASTIX_INCLUDES PASTIX_LIBRARIES) -- Could NOT find SCOTCH (missing: SCOTCH_INCLUDES SCOTCH_LIBRARIES) -- Could NOT find METIS (missing: METIS_INCLUDES METIS_LIBRARIES) -- Could NOT find SPQR (missing: SPQR_INCLUDES SPQR_LIBRARIES) -- Performing Test COMPILER_SUPPORT_FASTMATH -- Performing Test COMPILER_SUPPORT_FASTMATH - Success -- Configuring incomplete, errors occurred! See also "/tmp/pip-RTQ3Ml-build/arch-python-linux-x86_64/externalpackages/hg.eigen/build/CMakeFiles/CMakeOutput.log". See also "/tmp/pip-RTQ3Ml-build/arch-python-linux-x86_64/externalpackages/hg.eigen/build/CMakeFiles/CMakeError.log".CMake Error at /usr/lib64/boost/Boost.cmake:536 (message): The imported target "boost_date_time-static" references the file "/usr/lib64/lib64/libboost_date_time.a" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib64/boost/Boost.cmake" but not all the files it references. Call Stack (most recent call first): /usr/lib64/boost/BoostConfig.cmake:28 (include) /usr/share/cmake/Modules/FindBoost.cmake:177 (find_package) test/CMakeLists.txt:336 (find_package) ******************************************************************************* Traceback (most recent call last): File "<string>", line 1, in <module> File "/tmp/pip-RTQ3Ml-build/setup.py", line 302, in <module> **metadata) File "/usr/local/modules/python/2.7.9/lib/python2.7/distutils/core.py", line 151, in setup dist.run_commands() File "/usr/local/modules/python/2.7.9/lib/python2.7/distutils/dist.py", line 953, in run_commands self.run_command(cmd) File "/usr/local/modules/python/2.7.9/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/tmp/pip-RTQ3Ml-build/setup.py", line 218, in run config(prefix, self.dry_run) File "/tmp/pip-RTQ3Ml-build/setup.py", line 148, in config if status != 0: raise RuntimeError(status) RuntimeError: 256 ---------------------------------------- Command "/usr/not-backed-up/firedrake/march/firedrake/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-RTQ3Ml-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-teBSaw-record/install-record.txt --single-version-externally-managed --compile --install-headers /usr/not-backed-up/firedrake/march/firedrake/include/site/python2.7/petsc" failed with error code 1 in /tmp/pip-RTQ3Ml-build/ Traceback (most recent call last): File "firedrake-install", line 1231, in <module> install("petsc/") File "firedrake-install", line 675, in install run_pip_install(["--ignore-installed", package]) File "firedrake-install", line 545, in run_pip_install check_call(pipinstall + pipargs) File "firedrake-install", line 366, in check_call subprocess.check_call(arguments, env=env) File "/usr/local/modules/python/2.7.9/lib/python2.7/subprocess.py", line 540, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['/usr/not-backed-up/firedrake/march/firedrake/bin/pip', 'install', '--no-binary', 'mpi4py', '--no-deps', '--ignore-installed', 'petsc/']' returned non-zero exit status 1