Dear Firedrakers,

My laptop seems to have issues when the install script attempts to install eigen.
What should I do to fix this?

Thanks

Will

Error:

===============================================================================

Trying to download hg://https://bitbucket.org/eigen/eigen/ for EIGEN

===============================================================================

Configuring EIGEN with cmake, this may take several minutes

===============================================================================

*******************************************************************************

UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):

-------------------------------------------------------------------------------

Error configuring EIGEN with cmake Could not execute "cd /tmp/pip-RTQ3Ml-build/arch-python-linux-x86_64/externalpackages/hg.eigen/build && /usr/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/usr/not-backed-up/firedrake/march/firedrake/lib/python2.7/site-packages/petsc -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="/usr/lib64/openmpi/bin/mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC -fstack-protector -g -O" -DCMAKE_CXX_COMPILER="/usr/lib64/openmpi/bin/mpicxx" -DCMAKE_CXX_FLAGS:STRING="-fstack-protector -g -O -fPIC" -DCMAKE_Fortran_COMPILER="/usr/lib64/openmpi/bin/mpif90" -DCMAKE_Fortran_FLAGS:STRING="-fPIC -ffree-line-length-0 -g -O" -DBUILD_SHARED_LIBS=on -DENABLE_OPENMP=OFF":

-- The C compiler identification is GNU 4.4.7

-- The CXX compiler identification is GNU 4.4.7

-- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc

-- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc -- works

-- Detecting C compiler ABI info

-- Detecting C compiler ABI info - done

-- Check for working CXX compiler: /usr/lib64/openmpi/bin/mpicxx

-- Check for working CXX compiler: /usr/lib64/openmpi/bin/mpicxx -- works

-- Detecting CXX compiler ABI info

-- Detecting CXX compiler ABI info - done

-- Performing Test standard_math_library_linked_to_automatically

-- Performing Test standard_math_library_linked_to_automatically - Success

-- Standard libraries to link to explicitly: none

-- Performing Test COMPILER_SUPPORT_WERROR

-- Performing Test COMPILER_SUPPORT_WERROR - Success

-- Performing Test COMPILER_SUPPORT_pedantic

-- Performing Test COMPILER_SUPPORT_pedantic - Success

-- Performing Test COMPILER_SUPPORT_Wall

-- Performing Test COMPILER_SUPPORT_Wall - Success

-- Performing Test COMPILER_SUPPORT_Wextra

-- Performing Test COMPILER_SUPPORT_Wextra - Success

-- Performing Test COMPILER_SUPPORT_Wundef

-- Performing Test COMPILER_SUPPORT_Wundef - Success

-- Performing Test COMPILER_SUPPORT_Wcastalign

-- Performing Test COMPILER_SUPPORT_Wcastalign - Success

-- Performing Test COMPILER_SUPPORT_Wcharsubscripts

-- Performing Test COMPILER_SUPPORT_Wcharsubscripts - Success

-- Performing Test COMPILER_SUPPORT_Wnonvirtualdtor

-- Performing Test COMPILER_SUPPORT_Wnonvirtualdtor - Success

-- Performing Test COMPILER_SUPPORT_Wunusedlocaltypedefs

-- Performing Test COMPILER_SUPPORT_Wunusedlocaltypedefs - Failed

-- Performing Test COMPILER_SUPPORT_Wpointerarith

-- Performing Test COMPILER_SUPPORT_Wpointerarith - Success

-- Performing Test COMPILER_SUPPORT_Wwritestrings

-- Performing Test COMPILER_SUPPORT_Wwritestrings - Success

-- Performing Test COMPILER_SUPPORT_Wformatsecurity

-- Performing Test COMPILER_SUPPORT_Wformatsecurity - Success

-- Performing Test COMPILER_SUPPORT_Wshorten64to32

-- Performing Test COMPILER_SUPPORT_Wshorten64to32 - Failed

-- Performing Test COMPILER_SUPPORT_Wlogicalop

-- Performing Test COMPILER_SUPPORT_Wlogicalop - Success

-- Performing Test COMPILER_SUPPORT_Wenumconversion

-- Performing Test COMPILER_SUPPORT_Wenumconversion - Failed

-- Performing Test COMPILER_SUPPORT_Wcpp11extensions

-- Performing Test COMPILER_SUPPORT_Wcpp11extensions - Failed

-- Performing Test COMPILER_SUPPORT_Wdoublepromotion

-- Performing Test COMPILER_SUPPORT_Wdoublepromotion - Failed

-- Performing Test COMPILER_SUPPORT_Wnopsabi

-- Performing Test COMPILER_SUPPORT_Wnopsabi - Success

-- Performing Test COMPILER_SUPPORT_Wnovariadicmacros

-- Performing Test COMPILER_SUPPORT_Wnovariadicmacros - Success

-- Performing Test COMPILER_SUPPORT_Wnolonglong

-- Performing Test COMPILER_SUPPORT_Wnolonglong - Success

-- Performing Test COMPILER_SUPPORT_fnochecknew

-- Performing Test COMPILER_SUPPORT_fnochecknew - Success

-- Performing Test COMPILER_SUPPORT_fnocommon

-- Performing Test COMPILER_SUPPORT_fnocommon - Success

-- Performing Test COMPILER_SUPPORT_fstrictaliasing

-- Performing Test COMPILER_SUPPORT_fstrictaliasing - Success

-- Performing Test COMPILER_SUPPORT_wd981

-- Performing Test COMPILER_SUPPORT_wd981 - Failed

-- Performing Test COMPILER_SUPPORT_wd2304

-- Performing Test COMPILER_SUPPORT_wd2304 - Failed

-- Performing Test COMPILER_SUPPORT_STRICTANSI

-- Performing Test COMPILER_SUPPORT_STRICTANSI - Failed

-- Performing Test COMPILER_SUPPORT_Qunusedarguments

-- Performing Test COMPILER_SUPPORT_Qunusedarguments - Failed

-- Performing Test COMPILER_SUPPORT_ansi

-- Performing Test COMPILER_SUPPORT_ansi - Success

-- Performing Test COMPILER_SUPPORT_OPENMP

-- Performing Test COMPILER_SUPPORT_OPENMP - Success

-- Performing Test EIGEN_COMPILER_SUPPORT_CPP11

-- Performing Test EIGEN_COMPILER_SUPPORT_CPP11 - Failed

-- Looking for Q_WS_X11

-- Looking for Q_WS_X11 - found

-- Looking for Q_WS_WIN

-- Looking for Q_WS_WIN - not found

-- Looking for Q_WS_QWS

-- Looking for Q_WS_QWS - not found

-- Looking for Q_WS_MAC

-- Looking for Q_WS_MAC - not found

-- Found Qt4: /usr/bin/qmake-qt4 (found version "4.6.2")

-- Performing Test EIGEN_COMPILER_SUPPORT_CXX11

-- Performing Test EIGEN_COMPILER_SUPPORT_CXX11 - Failed

-- The Fortran compiler identification is GNU

-- Check for working Fortran compiler: /usr/lib64/openmpi/bin/mpif90

-- Check for working Fortran compiler: /usr/lib64/openmpi/bin/mpif90 -- works

-- Detecting Fortran compiler ABI info

-- Detecting Fortran compiler ABI info - done

-- Checking whether /usr/lib64/openmpi/bin/mpif90 supports Fortran 90

-- Checking whether /usr/lib64/openmpi/bin/mpif90 supports Fortran 90 -- yes

-- Could NOT find CHOLMOD (missing: CHOLMOD_INCLUDES CHOLMOD_LIBRARIES)

-- Could NOT find UMFPACK (missing: UMFPACK_INCLUDES UMFPACK_LIBRARIES)

-- Could NOT find SUPERLU (missing: SUPERLU_INCLUDES SUPERLU_LIBRARIES SUPERLU_VERSION_OK)

-- Could NOT find PASTIX (missing: PASTIX_INCLUDES PASTIX_LIBRARIES)

-- Could NOT find SCOTCH (missing: SCOTCH_INCLUDES SCOTCH_LIBRARIES)

-- Could NOT find METIS (missing: METIS_INCLUDES METIS_LIBRARIES)

-- Could NOT find SPQR (missing: SPQR_INCLUDES SPQR_LIBRARIES)

-- Performing Test COMPILER_SUPPORT_FASTMATH

-- Performing Test COMPILER_SUPPORT_FASTMATH - Success

-- Configuring incomplete, errors occurred!

See also "/tmp/pip-RTQ3Ml-build/arch-python-linux-x86_64/externalpackages/hg.eigen/build/CMakeFiles/CMakeOutput.log".

See also "/tmp/pip-RTQ3Ml-build/arch-python-linux-x86_64/externalpackages/hg.eigen/build/CMakeFiles/CMakeError.log".CMake Error at /usr/lib64/boost/Boost.cmake:536 (message):

The imported target "boost_date_time-static" references the file

"/usr/lib64/lib64/libboost_date_time.a"

but this file does not exist. Possible reasons include:

* The file was deleted, renamed, or moved to another location.

* An install or uninstall procedure did not complete successfully.

* The installation package was faulty and contained

"/usr/lib64/boost/Boost.cmake"

but not all the files it references.

Call Stack (most recent call first):

/usr/lib64/boost/BoostConfig.cmake:28 (include)

/usr/share/cmake/Modules/FindBoost.cmake:177 (find_package)

test/CMakeLists.txt:336 (find_package)

*******************************************************************************

Traceback (most recent call last):

File "<string>", line 1, in <module>

File "/tmp/pip-RTQ3Ml-build/setup.py", line 302, in <module>

**metadata)

File "/usr/local/modules/python/2.7.9/lib/python2.7/distutils/core.py", line 151, in setup

dist.run_commands()

File "/usr/local/modules/python/2.7.9/lib/python2.7/distutils/dist.py", line 953, in run_commands

self.run_command(cmd)

File "/usr/local/modules/python/2.7.9/lib/python2.7/distutils/dist.py", line 972, in run_command

cmd_obj.run()

File "/tmp/pip-RTQ3Ml-build/setup.py", line 218, in run

config(prefix, self.dry_run)

File "/tmp/pip-RTQ3Ml-build/setup.py", line 148, in config

if status != 0: raise RuntimeError(status)

RuntimeError: 256

----------------------------------------

Command "/usr/not-backed-up/firedrake/march/firedrake/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-RTQ3Ml-build/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-teBSaw-record/install-record.txt --single-version-externally-managed --compile --install-headers /usr/not-backed-up/firedrake/march/firedrake/include/site/python2.7/petsc" failed with error code 1 in /tmp/pip-RTQ3Ml-build/

Traceback (most recent call last):

File "firedrake-install", line 1231, in <module>

install("petsc/")

File "firedrake-install", line 675, in install

run_pip_install(["--ignore-installed", package])

File "firedrake-install", line 545, in run_pip_install

check_call(pipinstall + pipargs)

File "firedrake-install", line 366, in check_call

subprocess.check_call(arguments, env=env)

File "/usr/local/modules/python/2.7.9/lib/python2.7/subprocess.py", line 540, in check_call

raise CalledProcessError(retcode, cmd)

subprocess.CalledProcessError: Command '['/usr/not-backed-up/firedrake/march/firedrake/bin/pip', 'install', '--no-binary', 'mpi4py', '--no-deps', '--ignore-installed', 'petsc/']' returned non-zero exit status 1