Dear All, I need some help please with installing Nektar++ on Ubuntu 16.04 . I've been trying to install it using the ccmake method as i was interested in using the NEKMESHGEN module. I have however been encountering this errror after "make install" : CMakeFiles/Makefile2:1023: recipe for target 'library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all' failed make[1]: *** [library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... [ 38%] Linking CXX executable LocProject1D [ 38%] Built target LocProject1D [ 38%] Linking CXX executable LocProject_Diff2D [ 38%] Built target LocProject_Diff2D [ 38%] Linking CXX shared library libCollections.so [ 39%] Linking CXX executable LocProject3D [ 39%] Linking CXX executable LocalRegionsUnitTests [ 39%] Built target Collections [ 39%] Built target LocProject3D [ 39%] Built target LocalRegionsUnitTests Makefile:162: recipe for target 'all' failed make: *** [all] Error 2 I have also tried ''make VERBOSE=1'' and get this : [cid:5314fbf7-1cf2-4283-b059-7be9760ffb23] When i tried compiling with NEKMESHGEN off it seemed to work. Does anyone know how i can get around this issue? Also is there a way to install the mesh generator without cmake? could i do it via sudo apt-get install? Kind Regards, Thomas Andreou t.andreou.1@research.gla.ac.uk PhD Student Aerospace Sciences Division University of Glasgow
Hi Thomas, Have you installed Open CASCADE Community Edition? If so, have you installed this from source or packages, or let Nektar++ build it from source as part of the build process? The error shown in your terminal output looks to be the result of the build not finding one of the OCE header files. On Ubuntu 16.04, you should be able to install the OCE dependencies from packages: apt-get install liboce-foundation-dev liboce-modeling-dev liboce-ocaf-dev liboce-ocaf-lite-dev liboce-visualization-dev I assume this will also install the associated runtime library packages as dependencies but if for some reason they're not installed automatically, you also need liboce-foundation10 liboce-modeling10 liboce-ocaf10 liboce-visualization10, and I think also libosmesa6 Once these packages are installed, in ccmake, set: THIRDPARTY_BUILD_OCE=OFF, then re-configure. You should find that cmake discovers the OCE installation and the OCE_DIR, OCC_INCLUDE_DIR and OCC_LIBRARIES options are set automatically. Assuming there are no other issues, the build of the NekMesh utilities should now complete successfully. Regards, Jeremy On 19 Feb 2018, at 12:27, Thomas Andreou <t.andreou.1@research.gla.ac.uk> wrote:
Dear All, I need some help please with installing Nektar++ on Ubuntu 16.04 . I've been trying to install it using the ccmake method as i was interested in using the NEKMESHGEN module. I have however been encountering this errror after "make install" :
CMakeFiles/Makefile2:1023: recipe for target 'library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all' failed make[1]: *** [library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... [ 38%] Linking CXX executable LocProject1D [ 38%] Built target LocProject1D [ 38%] Linking CXX executable LocProject_Diff2D [ 38%] Built target LocProject_Diff2D [ 38%] Linking CXX shared library libCollections.so [ 39%] Linking CXX executable LocProject3D [ 39%] Linking CXX executable LocalRegionsUnitTests [ 39%] Built target Collections [ 39%] Built target LocProject3D [ 39%] Built target LocalRegionsUnitTests Makefile:162: recipe for target 'all' failed make: *** [all] Error 2
I have also tried ''make VERBOSE=1'' and get this :
<errirwdfqw.png>
When i tried compiling with NEKMESHGEN off it seemed to work. Does anyone know how i can get around this issue?
Also is there a way to install the mesh generator without cmake? could i do it via sudo apt-get install?
Kind Regards,
Thomas Andreou t.andreou.1@research.gla.ac.uk PhD Student Aerospace Sciences Division University of Glasgow
_______________________________________________ Nektar-users mailing list Nektar-users@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/nektar-users
Dear Thomas, You look to be using an operating-system packaged version of the OpenCascade OCE library. Possibly you are missing one of the development packages. In particular, if you are on an Ubuntu/Debian system, the package which contains the missing header file is called liboce-ocaf-dev. Hopefully installing this package should fix the error. If it does not, please tell us the packages you have installed relating to OCE, and their version number. Kind regards, Chris On 19/02/18 12:27, Thomas Andreou wrote:
Dear All,
I need some help please with installing Nektar++ on Ubuntu 16.04 .
I've been trying to install it using the ccmake method as i was interested in using the NEKMESHGEN module.
I have however been encountering this errror after "make install" :
CMakeFiles/Makefile2:1023: recipe for target 'library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all' failed make[1]: *** [library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... [ 38%] Linking CXX executable LocProject1D [ 38%] Built target LocProject1D [ 38%] Linking CXX executable LocProject_Diff2D [ 38%] Built target LocProject_Diff2D [ 38%] Linking CXX shared library libCollections.so [ 39%] Linking CXX executable LocProject3D [ 39%] Linking CXX executable LocalRegionsUnitTests [ 39%] Built target Collections [ 39%] Built target LocProject3D [ 39%] Built target LocalRegionsUnitTests Makefile:162: recipe for target 'all' failed make: *** [all] Error 2
I have also tried ''make VERBOSE=1'' and get this :
When i tried compiling with NEKMESHGEN off it seemed to work.
Does anyone know how i can get around this issue?
Also is there a way to install the mesh generator without cmake? could i do it via sudo apt-get install?
Kind Regards,
Thomas Andreou
t.andreou.1@research.gla.ac.uk
PhD Student
Aerospace Sciences Division
University of Glasgow
_______________________________________________ Nektar-users mailing list Nektar-users@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/nektar-users
-- Chris Cantwell Imperial College London South Kensington Campus London SW7 2AZ Email: c.cantwell@imperial.ac.uk www.imperial.ac.uk/people/c.cantwell
Thanks Jeremy, Chris, I have followed your advice and ran ctest after and it seems to all work well. I have one more question. How do i configure Nektar++ so that i can call it from terminal? I couldn't find anything relating to this in the userguide. ________________________________ From: nektar-users-bounces@imperial.ac.uk <nektar-users-bounces@imperial.ac.uk> on behalf of Chris Cantwell <c.cantwell@imperial.ac.uk> Sent: 19 February 2018 14:16:33 To: nektar-users@imperial.ac.uk Subject: Re: [Nektar-users] Nektar++ Installation question Dear Thomas, You look to be using an operating-system packaged version of the OpenCascade OCE library. Possibly you are missing one of the development packages. In particular, if you are on an Ubuntu/Debian system, the package which contains the missing header file is called liboce-ocaf-dev. Hopefully installing this package should fix the error. If it does not, please tell us the packages you have installed relating to OCE, and their version number. Kind regards, Chris On 19/02/18 12:27, Thomas Andreou wrote:
Dear All,
I need some help please with installing Nektar++ on Ubuntu 16.04 .
I've been trying to install it using the ccmake method as i was interested in using the NEKMESHGEN module.
I have however been encountering this errror after "make install" :
CMakeFiles/Makefile2:1023: recipe for target 'library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all' failed make[1]: *** [library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... [ 38%] Linking CXX executable LocProject1D [ 38%] Built target LocProject1D [ 38%] Linking CXX executable LocProject_Diff2D [ 38%] Built target LocProject_Diff2D [ 38%] Linking CXX shared library libCollections.so [ 39%] Linking CXX executable LocProject3D [ 39%] Linking CXX executable LocalRegionsUnitTests [ 39%] Built target Collections [ 39%] Built target LocProject3D [ 39%] Built target LocalRegionsUnitTests Makefile:162: recipe for target 'all' failed make: *** [all] Error 2
I have also tried ''make VERBOSE=1'' and get this :
When i tried compiling with NEKMESHGEN off it seemed to work.
Does anyone know how i can get around this issue?
Also is there a way to install the mesh generator without cmake? could i do it via sudo apt-get install?
Kind Regards,
Thomas Andreou
t.andreou.1@research.gla.ac.uk
PhD Student
Aerospace Sciences Division
University of Glasgow
_______________________________________________ Nektar-users mailing list Nektar-users@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/nektar-users
-- Chris Cantwell Imperial College London South Kensington Campus London SW7 2AZ Email: c.cantwell@imperial.ac.uk www.imperial.ac.uk/people/c.cantwell<http://www.imperial.ac.uk/people/c.cantwell> _______________________________________________ Nektar-users mailing list Nektar-users@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/nektar-users
Hi Thomas, When you say you want to call Nektar++ from the terminal, can you provide a little more information about what you're trying to achieve? Are you wanting to know how to run the various solvers from the terminal? How have you currently installed Nektar++? If you've not set an install prefix (the CMAKE_INSTALL_PREFIX parameter in cmake), then the default install location will be a dist subdirectory of your build directory. If you run "make install" after your build succeeds, the solver executables and Nektar++ libraries will be installed to this location. You could then set up your system path to point to the build/dist/bin directory of your Nektar++ directory. Alternatively you can set your CMAKE_INSTALL_PREFIX to /usr or /usr/local or similar and install the Nektar++ binaries into a system directory where they'll be on the default system path. Once the binaries are installed and accessible within your path, you should then be able to call the various solver executables, e.g. IncNavierStokesSolver, CompressibleFlowSolver, etc. directly from the terminal, passing in your XML input session file containing your job configuration and geometry. You can find some examples of configuring a session file for the incompressible Navier-Stokes solver in the user guide: http://doc.nektar.info/userguide/latest/user-guidese42.html Hope this helps but apologies if I've misunderstood your question. Regards, Jeremy On 19 Feb 2018, at 14:42, Thomas Andreou <t.andreou.1@research.gla.ac.uk> wrote:
Thanks Jeremy, Chris, I have followed your advice and ran ctest after and it seems to all work well.
I have one more question. How do i configure Nektar++ so that i can call it from terminal? I couldn't find anything relating to this in the userguide.
From: nektar-users-bounces@imperial.ac.uk <nektar-users-bounces@imperial.ac.uk> on behalf of Chris Cantwell <c.cantwell@imperial.ac.uk> Sent: 19 February 2018 14:16:33 To: nektar-users@imperial.ac.uk Subject: Re: [Nektar-users] Nektar++ Installation question
Dear Thomas,
You look to be using an operating-system packaged version of the OpenCascade OCE library. Possibly you are missing one of the development packages. In particular, if you are on an Ubuntu/Debian system, the package which contains the missing header file is called liboce-ocaf-dev. Hopefully installing this package should fix the error.
If it does not, please tell us the packages you have installed relating to OCE, and their version number.
Kind regards, Chris
On 19/02/18 12:27, Thomas Andreou wrote:
Dear All,
I need some help please with installing Nektar++ on Ubuntu 16.04 .
I've been trying to install it using the ccmake method as i was interested in using the NEKMESHGEN module.
I have however been encountering this errror after "make install" :
CMakeFiles/Makefile2:1023: recipe for target 'library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all' failed make[1]: *** [library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... [ 38%] Linking CXX executable LocProject1D [ 38%] Built target LocProject1D [ 38%] Linking CXX executable LocProject_Diff2D [ 38%] Built target LocProject_Diff2D [ 38%] Linking CXX shared library libCollections.so [ 39%] Linking CXX executable LocProject3D [ 39%] Linking CXX executable LocalRegionsUnitTests [ 39%] Built target Collections [ 39%] Built target LocProject3D [ 39%] Built target LocalRegionsUnitTests Makefile:162: recipe for target 'all' failed make: *** [all] Error 2
I have also tried ''make VERBOSE=1'' and get this :
When i tried compiling with NEKMESHGEN off it seemed to work.
Does anyone know how i can get around this issue?
Also is there a way to install the mesh generator without cmake? could i do it via sudo apt-get install?
Kind Regards,
Thomas Andreou
t.andreou.1@research.gla.ac.uk
PhD Student
Aerospace Sciences Division
University of Glasgow
_______________________________________________ Nektar-users mailing list Nektar-users@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/nektar-users
-- Chris Cantwell Imperial College London South Kensington Campus London SW7 2AZ Email: c.cantwell@imperial.ac.uk www.imperial.ac.uk/people/c.cantwell
_______________________________________________ Nektar-users mailing list Nektar-users@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/nektar-users
Hi Jeremy, Yes it was that i was interested how to call the various solvers from terminal. I changed the CMAKE_INSTALL_Prefix to /usr/local and now it seems to be fine . Thanks for your support. Kind regards, Thomas ________________________________ From: Jeremy Cohen <jeremy.cohen@imperial.ac.uk> Sent: 19 February 2018 15:21:54 To: Thomas Andreou Cc: nektar-users@imperial.ac.uk Subject: Re: [Nektar-users] Nektar++ Installation question Hi Thomas, When you say you want to call Nektar++ from the terminal, can you provide a little more information about what you're trying to achieve? Are you wanting to know how to run the various solvers from the terminal? How have you currently installed Nektar++? If you've not set an install prefix (the CMAKE_INSTALL_PREFIX parameter in cmake), then the default install location will be a dist subdirectory of your build directory. If you run "make install" after your build succeeds, the solver executables and Nektar++ libraries will be installed to this location. You could then set up your system path to point to the build/dist/bin directory of your Nektar++ directory. Alternatively you can set your CMAKE_INSTALL_PREFIX to /usr or /usr/local or similar and install the Nektar++ binaries into a system directory where they'll be on the default system path. Once the binaries are installed and accessible within your path, you should then be able to call the various solver executables, e.g. IncNavierStokesSolver, CompressibleFlowSolver, etc. directly from the terminal, passing in your XML input session file containing your job configuration and geometry. You can find some examples of configuring a session file for the incompressible Navier-Stokes solver in the user guide: http://doc.nektar.info/userguide/latest/user-guidese42.html Hope this helps but apologies if I've misunderstood your question. Regards, Jeremy On 19 Feb 2018, at 14:42, Thomas Andreou <t.andreou.1@research.gla.ac.uk<mailto:t.andreou.1@research.gla.ac.uk>> wrote: Thanks Jeremy, Chris, I have followed your advice and ran ctest after and it seems to all work well. I have one more question. How do i configure Nektar++ so that i can call it from terminal? I couldn't find anything relating to this in the userguide. ________________________________ From: nektar-users-bounces@imperial.ac.uk<mailto:nektar-users-bounces@imperial.ac.uk> <nektar-users-bounces@imperial.ac.uk<mailto:nektar-users-bounces@imperial.ac.uk>> on behalf of Chris Cantwell <c.cantwell@imperial.ac.uk<mailto:c.cantwell@imperial.ac.uk>> Sent: 19 February 2018 14:16:33 To: nektar-users@imperial.ac.uk<mailto:nektar-users@imperial.ac.uk> Subject: Re: [Nektar-users] Nektar++ Installation question Dear Thomas, You look to be using an operating-system packaged version of the OpenCascade OCE library. Possibly you are missing one of the development packages. In particular, if you are on an Ubuntu/Debian system, the package which contains the missing header file is called liboce-ocaf-dev. Hopefully installing this package should fix the error. If it does not, please tell us the packages you have installed relating to OCE, and their version number. Kind regards, Chris On 19/02/18 12:27, Thomas Andreou wrote:
Dear All,
I need some help please with installing Nektar++ on Ubuntu 16.04 .
I've been trying to install it using the ccmake method as i was interested in using the NEKMESHGEN module.
I have however been encountering this errror after "make install" :
CMakeFiles/Makefile2:1023: recipe for target 'library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all' failed make[1]: *** [library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... [ 38%] Linking CXX executable LocProject1D [ 38%] Built target LocProject1D [ 38%] Linking CXX executable LocProject_Diff2D [ 38%] Built target LocProject_Diff2D [ 38%] Linking CXX shared library libCollections.so [ 39%] Linking CXX executable LocProject3D [ 39%] Linking CXX executable LocalRegionsUnitTests [ 39%] Built target Collections [ 39%] Built target LocProject3D [ 39%] Built target LocalRegionsUnitTests Makefile:162: recipe for target 'all' failed make: *** [all] Error 2
I have also tried ''make VERBOSE=1'' and get this :
When i tried compiling with NEKMESHGEN off it seemed to work.
Does anyone know how i can get around this issue?
Also is there a way to install the mesh generator without cmake? could i do it via sudo apt-get install?
Kind Regards,
Thomas Andreou
t.andreou.1@research.gla.ac.uk<mailto:t.andreou.1@research.gla.ac.uk>
PhD Student
Aerospace Sciences Division
University of Glasgow
_______________________________________________ Nektar-users mailing list Nektar-users@imperial.ac.uk<mailto:Nektar-users@imperial.ac.uk> https://mailman.ic.ac.uk/mailman/listinfo/nektar-users
-- Chris Cantwell Imperial College London South Kensington Campus London SW7 2AZ Email: c.cantwell@imperial.ac.uk<mailto:c.cantwell@imperial.ac.uk> www.imperial.ac.uk/people/c.cantwell<http://www.imperial.ac.uk/people/c.cantwell> _______________________________________________ Nektar-users mailing list Nektar-users@imperial.ac.uk<mailto:Nektar-users@imperial.ac.uk> https://mailman.ic.ac.uk/mailman/listinfo/nektar-users
participants (3)
-
Chris Cantwell
-
Jeremy Cohen
-
Thomas Andreou