Hi Chris,
Here is the output and attached are the files from tmp_cylinder and tmp_sphere subdirectories within build/utilities/NekMesh:
Start 412: NekMesh_MeshGen/cylinder
21/22 Test #412: NekMesh_MeshGen/cylinder ........................***Failed 26.96 sec
sh: line 1: 55068 Aborted /media/sda7/sharmamh/nektar-master/build/utilities/NekMesh/NekMesh -m jac:list cylinder.mcf cylinder.xml:xml:test > output.out 2> output.err
Error occurred running test:
Command: /media/sda7/sharmamh/nektar-master/build/utilities/NekMesh/NekMesh -m jac:list cylinder.mcf cylinder.xml:xml:test 1>output.out 2>output.err
Files left in /media/sda7/sharmamh/nektar-master/build/utilities/NekMesh/tmp_cylinder
Start 413: NekMesh_MeshGen/sphere
22/22 Test #413: NekMesh_MeshGen/sphere ..........................***Failed 13.46 sec
sh: line 1: 55123 Aborted /media/sda7/sharmamh/nektar-master/build/utilities/NekMesh/NekMesh -m jac:list sphere.mcf sphere.xml:xml:test > output.out 2> output.err
Error occurred running test:
Command: /media/sda7/sharmamh/nektar-master/build/utilities/NekMesh/NekMesh -m jac:list sphere.mcf sphere.xml:xml:test 1>output.out 2>output.err
Files left in /media/sda7/sharmamh/nektar-master/build/utilities/NekMesh/tmp_sphere
91% tests passed, 2 tests failed out of 22
Total Test time (real) = 64.44 sec
The following tests FAILED:
412 - NekMesh_MeshGen/cylinder (Failed)
413 - NekMesh_MeshGen/sphere (Failed)
Errors while running CTest
Are there any other specific files that you need from the NekMesh directory, as there are many in it? Let me know if you do.
Thank you,
Manish
From: nektar-users-bounces@imperial.ac.uk <nektar-users-bounces@imperial.ac.uk>
on behalf of Chris Cantwell <c.cantwell@imperial.ac.uk>
Sent: Friday, August 26, 2016 3:20:47 AM
To: nektar-users@imperial.ac.uk
Subject: Re: [Nektar-users] Nektar++-4.3.3 compilation errors
Hi Manish,
Could you run ctest with an additional option as follows:
ctest --output-on-failure -R NekMesh
and send me the output? There should also be files generated in
sub-directories within build/utilities/NekMesh. If you can send me
those, they may also prove useful.
Cheers,
Chris
On 26/08/16 00:29, Sharma, Manish (sharmamh) wrote:
> Hi Chris,
>
>
>
> Thanks for your help.
>
>
>
> I was able to successfully recompile the code after installing the
> python-devel package. However, when I ran the ctest, all except two
> tests passed, and this is the output I received:
>
>
>
> 99% tests passed, 2 tests failed out of 413
>
> Total Test time (real) = 507.93 sec
>
> The following tests FAILED:
> 412 - NekMesh_MeshGen/cylinder (Failed)
> 413 - NekMesh_MeshGen/sphere (Failed)
> Errors while running CTest
>
>
>
> What could be the reason for this?
>
> Thank you,
>
>
>
> Manish
>
>
>
> ------------------------------------------------------------------------
>
> *From:*nektar-users-bounces@imperial.ac.uk
> <nektar-users-bounces@imperial.ac.uk> on behalf of Chris Cantwell
> <c.cantwell@imperial.ac.uk>
> *Sent:* Wednesday, August 24, 2016 4:27:04 PM
> *To:* nektar-users@imperial.ac.uk
> *Subject:* Re: [Nektar-users] Nektar++-4.3.3 compilation errors
>
>
>
> Hi Manish,
>
> This will depend on which exact operating system, but you probably want
> to install the libpython2.7-dev or python-devel package. This should
> provide the libpython2.7.so file which is missing on your system.
>
> Cheers,
> Chris
>
>
> On 24/08/16 19:59, Sharma, Manish (sharmamh) wrote:
>> Dear Douglas,
>>
>>
>>
>> I took your advice and downloaded the master branch from the
>> repository. The code had almost compiled, except at the end it gave the
>> following error:
>>
>>
>>
>> make[2]: *** No rule to make target '/usr/lib64/libpython2.7.so', needed
>> by 'utilities/Extras/VtkToPng'. Stop.
>> CMakeFiles/Makefile2:5919: recipe for target
>> 'utilities/Extras/CMakeFiles/VtkToPng.dir/all' failed
>> make[1]: *** [utilities/Extras/CMakeFiles/VtkToPng.dir/all] Error 2
>> Makefile:147: recipe for target 'all' failed
>> make: *** [all] Error 2
>>
>>
>>
>> What could the reason for this error might be, and how can I resolve it?
>>
>>
>>
>> I greatly appreciate your help for this. Thank you.
>>
>>
>>
>> Manish
>>
>>
>>
>> ------------------------------------------------------------------------
>>
>> *From:*Sharma, Manish (sharmamh)
>> *Sent:* Tuesday, August 23, 2016 6:44:07 PM
>> *To:* Serson, Douglas; nektar-users
>> *Subject:* RE: Nektar++-4.3.3 compilation errors
>>
>>
>>
>> Thank you very much, Douglas, for providing this solution.
>>
>>
>>
>> I will use your suggestions and compile the code.
>>
>>
>>
>> Manish
>>
>>
>>
>> *From:* Serson, Douglas [mailto:d.serson14@imperial.ac.uk]
>> *Sent:* Tuesday, August 23, 2016 6:35 PM
>> *To:* Sharma, Manish (sharmamh) <sharmamh@mail.uc.edu>; nektar-users
>> <nektar-users@imperial.ac.uk>
>> *Subject:* Re: Nektar++-4.3.3 compilation errors
>>
>>
>>
>> Dear Manish,
>>
>>
>>
>> It looks like this is caused by a bug which is already fixed in
>> our master branch, but unfortunately the fix is not in the latest release.
>>
>>
>>
>> One solution is to get the master branch from the repository.
>> Alternatively, I think this is only a problem when compiling with
>> the NEKTAR_USE_MESHGEN option. If you don't need this functionality,
>> switching it off in cmake should help.
>>
>>
>>
>> Cheers,
>>
>> Douglas
>>
>> ------------------------------------------------------------------------
>>
>> *From:*nektar-users-bounces@imperial.ac.uk
>> <mailto:nektar-users-bounces@imperial.ac.uk>
>> <nektar-users-bounces@imperial.ac.uk
>> <mailto:nektar-users-bounces@imperial.ac.uk>> on behalf of Sharma,
>> Manish (sharmamh) <sharmamh@mail.uc.edu <mailto:sharmamh@mail.uc.edu>>
>> *Sent:* 23 August 2016 23:09:06
>> *To:* nektar-users
>> *Subject:* [Nektar-users] Nektar++-4.3.3 compilation errors
>>
>>
>>
>> Dear All,
>>
>>
>>
>> I am trying to compile the latest version of the code, nektar++-4.3.3,
>> and I am getting the following error:
>>
>>
>>
>> In file included from
>> /home/manish/nektar++-4.3.3/library/NekMeshUtils/SurfaceMeshing/CurveMesh.h:44:0,
>>
>> from
>> /home/manish/nektar++-4.3.3/library/NekMeshUtils/SurfaceMeshing/CurveMesh.cpp:36:
>>
>> /home/manish/nektar++-4.3.3/library/NekMeshUtils/Octree/Octree.h:76:18:
>> error: ‘string’ does not name a type
>>
>> const string uds)
>>
>> ^
>>
>> /home/manish/nektar++-4.3.3/library/NekMeshUtils/Octree/Octree.h:183:5:
>> error: ‘string’ does not name a type
>>
>> string m_udsfile;
>>
>> ^
>>
>> /home/manish/nektar++-4.3.3/library/NekMeshUtils/Octree/Octree.h: In
>> constructor
>> ‘Nektar::NekMeshUtils::Octree::Octree(Nektar::NekMeshUtils::CADSystemSharedPtr,
>> bool, Nektar::NekDouble, Nektar::NekDouble, Nektar::NekDouble, int)’:
>>
>> /home/manish/nektar++-4.3.3/library/NekMeshUtils/Octree/Octree.h:78:27:
>> error: class ‘Nektar::NekMeshUtils::Octree’ does not have any field
>> named ‘m_udsfile’
>>
>> m_verbose(ver), m_udsfile(uds)
>>
>> ^
>>
>> library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/build.make:307: recipe
>> for target
>> 'library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/SurfaceMeshing/CurveMesh.cpp.o'
>> failed
>>
>> make[2]: ***
>> [library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/SurfaceMeshing/CurveMesh.cpp.o]
>> Error 1
>>
>> CMakeFiles/Makefile2:904: recipe for target
>> 'library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all' failed
>>
>> make[1]: *** [library/NekMeshUtils/CMakeFiles/NekMeshUtils.dir/all] Error 2
>>
>> Makefile:146: recipe for target 'all' failed
>>
>> make: *** [all] Error 2
>>
>>
>>
>> This error showed up when compiling the 4.3.2 version of the code too.
>>
>> What could I be doing wrong, and how can I resolve it?
>>
>>
>>
>> Looking forward to hearing from you soon.
>>
>> Thank you,
>>
>>
>>
>> Manish Sharma
>>
>>
>>
>> _______________________________________________
>> Nektar-users mailing list
>> Nektar-users@imperial.ac.uk
>> https://mailman.ic.ac.uk/mailman/listinfo/nektar-users
>>
>
> --
> Chris Cantwell
> Imperial College London
> South Kensington Campus
> London SW7 2AZ
> Email: c.cantwell@imperial.ac.uk
> www.imperial.ac.uk/people/c.cantwell
> <http://www.imperial.ac.uk/people/c.cantwell>
>
> _______________________________________________
> Nektar-users mailing list
> Nektar-users@imperial.ac.uk
> https://mailman.ic.ac.uk/mailman/listinfo/nektar-users
>
--
Chris Cantwell
Imperial College London
South Kensington Campus
London SW7 2AZ
Email: c.cantwell@imperial.ac.uk
www.imperial.ac.uk/people/c.cantwell
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