I did not succed to install firedrake too bad for me could you help me please ? here is what i get when runing make alltests the errors are at the end of this log (firedrake) naceur@kahina:~/Documents/firedrake/src/firedrake$ make alltest Building extension modules running build_ext cythoning firedrake/dmplex.pyx to firedrake/dmplex.c building 'firedrake.dmplex' extension creating build creating build/temp.linux-x86_64-3.5 creating build/temp.linux-x86_64-3.5/firedrake mpicc -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include -I/home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc4py/include -I/home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include -I/home/naceur/Documents/firedrake/include -I/usr/include/python3.5m -c firedrake/dmplex.c -o build/temp.linux-x86_64-3.5/firedrake/dmplex.o In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4, from firedrake/dmplex.c:566: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscbag.h:4:0, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:5, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscsys.h:255:0: warning: "__STDC_FORMAT_MACROS" redefined #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/numpyconfig.h:4:0, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/npy_common.h:5, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:4, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4, from firedrake/dmplex.c:566: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/_numpyconfig.h:31:0: note: this is the location of the previous definition #define __STDC_FORMAT_MACROS 1 ^ firedrake/dmplex.c: In function ‘__pyx_pf_9firedrake_6dmplex_facet_numbering’: firedrake/dmplex.c:4524:229: warning: passing argument 3 of ‘DMPlexGetSupport’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_11 = __pyx_f_9firedrake_6dmplex_CHKERR(DMPlexGetSupport(__pyx_v_plex->dm, (*__Pyx_BufPtrCContig1d(PetscInt *, __pyx_pybuffernd_facets.rcbuffer->pybuffer.buf, __pyx_t_17, __pyx_pybuffernd_facets.diminfo[0].strides)), (&__pyx_v_cells))); if (unlikely(__pyx_t_11 == ((int)-1))) __PYX_ERR(0, 64, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:16:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdmplex.h:71:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode DMPlexGetSupport(DM, PetscInt, const PetscInt *[]); ^ firedrake/dmplex.c: In function ‘__pyx_pf_9firedrake_6dmplex_2closure_ordering’: firedrake/dmplex.c:5955:126: warning: passing argument 3 of ‘DMPlexGetCone’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_9 = __pyx_f_9firedrake_6dmplex_CHKERR(DMPlexGetCone(__pyx_v_plex->dm, (__pyx_v_closure[(2 * __pyx_v_ci)]), (&__pyx_v_face_vertices))); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(0, 190, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:16:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdmplex.h:63:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]); ^ firedrake/dmplex.c: In function ‘__pyx_pf_9firedrake_6dmplex_20mark_entity_classes’: firedrake/dmplex.c:14346:115: warning: passing argument 4 of ‘PetscSFGetGraph’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_8 = __pyx_f_9firedrake_6dmplex_CHKERR(PetscSFGetGraph(__pyx_v_point_sf->sf, NULL, (&__pyx_v_nleaves), (&__pyx_v_ilocal), NULL)); if (unlikely(__pyx_t_8 == ((int)-1))) __PYX_ERR(0, 901, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:12:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscsf.h:76:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt*,PetscInt*,const PetscInt**,const PetscSFNode**); ^ firedrake/dmplex.c: In function ‘__pyx_pf_9firedrake_6dmplex_22get_entity_classes’: firedrake/dmplex.c:15262:90: warning: passing argument 2 of ‘ISGetIndices’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_7 = __pyx_f_9firedrake_6dmplex_CHKERR(ISGetIndices(__pyx_v_class_is->iset, (&__pyx_v_indices))); if (unlikely(__pyx_t_7 == ((int)-1))) __PYX_ERR(0, 975, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscvec.h:9:0, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscmat.h:6, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdm.h:6, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdmda.h:4, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:13, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscis.h:52:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode ISGetIndices(IS,const PetscInt *[]); ^ firedrake/dmplex.c:15343:94: warning: passing argument 2 of ‘ISRestoreIndices’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_7 = __pyx_f_9firedrake_6dmplex_CHKERR(ISRestoreIndices(__pyx_v_class_is->iset, (&__pyx_v_indices))); if (unlikely(__pyx_t_7 == ((int)-1))) __PYX_ERR(0, 981, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscvec.h:9:0, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscmat.h:6, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdm.h:6, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdmda.h:4, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:13, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscis.h:53:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode ISRestoreIndices(IS,const PetscInt *[]); ^ firedrake/dmplex.c: In function ‘__pyx_pf_9firedrake_6dmplex_36get_cell_remote_ranks’: firedrake/dmplex.c:19792:122: warning: passing argument 4 of ‘PetscSFGetGraph’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_9 = __pyx_f_9firedrake_6dmplex_CHKERR(PetscSFGetGraph(__pyx_v_sf->sf, (&__pyx_v_nroots), (&__pyx_v_nleaves), (&__pyx_v_ilocal), (&__pyx_v_iremote))); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(0, 1297, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:12:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscsf.h:76:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt*,PetscInt*,const PetscInt**,const PetscSFNode**); ^ firedrake/dmplex.c:19792:141: warning: passing argument 5 of ‘PetscSFGetGraph’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_9 = __pyx_f_9firedrake_6dmplex_CHKERR(PetscSFGetGraph(__pyx_v_sf->sf, (&__pyx_v_nroots), (&__pyx_v_nleaves), (&__pyx_v_ilocal), (&__pyx_v_iremote))); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(0, 1297, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:12:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscsf.h:76:29: note: expected ‘const PetscSFNode ** {aka const struct <anonymous> **}’ but argument is of type ‘PetscSFNode ** {aka struct <anonymous> **}’ PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt*,PetscInt*,const PetscInt**,const PetscSFNode**); ^ firedrake/dmplex.c: In function ‘__pyx_f_9firedrake_6dmplex_get_edge_global_vertices’: firedrake/dmplex.c:20058:96: warning: passing argument 3 of ‘DMPlexGetCone’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_9firedrake_6dmplex_CHKERR(DMPlexGetCone(__pyx_v_plex->dm, __pyx_v_facet, (&__pyx_v_vs))); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 1334, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:16:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdmplex.h:63:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]); ^ firedrake/dmplex.c: In function ‘__pyx_f_9firedrake_6dmplex_get_communication_lists’: firedrake/dmplex.c:20732:97: warning: passing argument 3 of ‘DMPlexGetSupport’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_3 = __pyx_f_9firedrake_6dmplex_CHKERR(DMPlexGetSupport(__pyx_v_plex->dm, __pyx_v_f, (&__pyx_v_support))); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(0, 1437, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:16:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdmplex.h:71:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode DMPlexGetSupport(DM, PetscInt, const PetscInt *[]); ^ firedrake/dmplex.c:21213:126: warning: passing argument 4 of ‘qsort’ from incompatible pointer type [-Wincompatible-pointer-types] qsort(__pyx_v_cfacets, ((__pyx_v_offsets[0])[(__pyx_v_nranks[0])]), (sizeof(struct __pyx_t_9firedrake_6dmplex_CommFacet)), (&__pyx_f_9firedrake_6dmplex_CommFacet_cmp)); ^ In file included from /usr/include/python3.5m/Python.h:34:0, from firedrake/dmplex.c:4: /usr/include/stdlib.h:764:13: note: expected ‘__compar_fn_t {aka int (*)(const void *, const void *)}’ but argument is of type ‘int (*)(void *, void *)’ extern void qsort (void *__base, size_t __nmemb, size_t __size, ^ firedrake/dmplex.c: In function ‘__pyx_f_9firedrake_6dmplex_plex_get_restricted_support’: firedrake/dmplex.c:21369:95: warning: passing argument 3 of ‘DMPlexGetSupport’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_9firedrake_6dmplex_CHKERR(DMPlexGetSupport(__pyx_v_plex->dm, __pyx_v_f, (&__pyx_v_support))); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 1557, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:16:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdmplex.h:71:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode DMPlexGetSupport(DM, PetscInt, const PetscInt *[]); ^ firedrake/dmplex.c: In function ‘__pyx_f_9firedrake_6dmplex_traverse_cell_string’: firedrake/dmplex.c:21585:94: warning: passing argument 3 of ‘DMPlexGetCone’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_9firedrake_6dmplex_CHKERR(DMPlexGetCone(__pyx_v_plex->dm, __pyx_v_c, (&__pyx_v_cone))); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 1621, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:16:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdmplex.h:63:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]); ^ firedrake/dmplex.c:21666:105: warning: passing argument 3 of ‘DMPlexGetConeOrientation’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_9firedrake_6dmplex_CHKERR(DMPlexGetConeOrientation(__pyx_v_plex->dm, __pyx_v_c, (&__pyx_v_cone_orient))); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 1630, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:16:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdmplex.h:67:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientation(DM, PetscInt, const PetscInt *[]); ^ firedrake/dmplex.c: In function ‘__pyx_pf_9firedrake_6dmplex_40orientations_facet2cell’: firedrake/dmplex.c:24681:96: warning: passing argument 3 of ‘DMPlexGetCone’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_9 = __pyx_f_9firedrake_6dmplex_CHKERR(DMPlexGetCone(__pyx_v_plex->dm, __pyx_v_c, (&__pyx_v_cone))); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(0, 1998, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:16:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdmplex.h:63:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]); ^ firedrake/dmplex.c:24690:107: warning: passing argument 3 of ‘DMPlexGetConeOrientation’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_9 = __pyx_f_9firedrake_6dmplex_CHKERR(DMPlexGetConeOrientation(__pyx_v_plex->dm, __pyx_v_c, (&__pyx_v_cone_orient))); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(0, 1999, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:16:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdmplex.h:67:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientation(DM, PetscInt, const PetscInt *[]); ^ firedrake/dmplex.c:24893:100: warning: passing argument 3 of ‘DMPlexGetCone’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_9 = __pyx_f_9firedrake_6dmplex_CHKERR(DMPlexGetCone(__pyx_v_plex->dm, __pyx_v_facet, (&__pyx_v_cone))); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(0, 2055, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:16:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscdmplex.h:63:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]); ^ firedrake/dmplex.c: In function ‘__pyx_pf_9firedrake_6dmplex_42exchange_cell_orientations’: firedrake/dmplex.c:25444:123: warning: passing argument 4 of ‘PetscSFGetGraph’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_10 = __pyx_f_9firedrake_6dmplex_CHKERR(PetscSFGetGraph(__pyx_v_sf->sf, (&__pyx_v_nroots), (&__pyx_v_nleaves), (&__pyx_v_ilocal), (&__pyx_v_iremote))); if (unlikely(__pyx_t_10 == ((int)-1))) __PYX_ERR(0, 2101, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:12:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscsf.h:76:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt*,PetscInt*,const PetscInt**,const PetscSFNode**); ^ firedrake/dmplex.c:25444:142: warning: passing argument 5 of ‘PetscSFGetGraph’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_10 = __pyx_f_9firedrake_6dmplex_CHKERR(PetscSFGetGraph(__pyx_v_sf->sf, (&__pyx_v_nroots), (&__pyx_v_nleaves), (&__pyx_v_ilocal), (&__pyx_v_iremote))); if (unlikely(__pyx_t_10 == ((int)-1))) __PYX_ERR(0, 2101, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:12:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscsf.h:76:29: note: expected ‘const PetscSFNode ** {aka const struct <anonymous> **}’ but argument is of type ‘PetscSFNode ** {aka struct <anonymous> **}’ PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt*,PetscInt*,const PetscInt**,const PetscSFNode**); ^ firedrake/dmplex.c: In function ‘__pyx_pf_9firedrake_6dmplex_46prune_sf’: firedrake/dmplex.c:26190:120: warning: passing argument 4 of ‘PetscSFGetGraph’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_9firedrake_6dmplex_CHKERR(PetscSFGetGraph(__pyx_v_sf->sf, (&__pyx_v_nroots), (&__pyx_v_nleaves), (&__pyx_v_ilocal), (&__pyx_v_iremote))); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 2161, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:12:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscsf.h:76:29: note: expected ‘const PetscInt ** {aka const int **}’ but argument is of type ‘PetscInt ** {aka int **}’ PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt*,PetscInt*,const PetscInt**,const PetscSFNode**); ^ firedrake/dmplex.c:26190:139: warning: passing argument 5 of ‘PetscSFGetGraph’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_9firedrake_6dmplex_CHKERR(PetscSFGetGraph(__pyx_v_sf->sf, (&__pyx_v_nroots), (&__pyx_v_nleaves), (&__pyx_v_ilocal), (&__pyx_v_iremote))); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 2161, __pyx_L1_error) ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:12:0, from firedrake/dmplex.c:568: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscsf.h:76:29: note: expected ‘const PetscSFNode ** {aka const struct <anonymous> **}’ but argument is of type ‘PetscSFNode ** {aka struct <anonymous> **}’ PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt*,PetscInt*,const PetscInt**,const PetscSFNode**); ^ firedrake/dmplex.c: In function ‘__pyx_pf_9firedrake_6dmplex_8get_cell_nodes.isra.79’: firedrake/dmplex.c:2282:82: warning: ‘__pyx_pybuffernd_layer_extents.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized] #define __Pyx_BufPtrCContig2d(type, buf, i0, s0, i1, s1) ((type)((char*)buf + i0 * s0) + i1) ^ firedrake/dmplex.c:8816:21: note: ‘__pyx_pybuffernd_layer_extents.diminfo[0].strides’ was declared here __Pyx_LocalBuf_ND __pyx_pybuffernd_layer_extents; ^ firedrake/dmplex.c: In function ‘__pyx_pf_9firedrake_6dmplex_6create_section.isra.80’: firedrake/dmplex.c:8602:19: warning: ‘__pyx_v_ndof’ may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_t_7 = __pyx_f_9firedrake_6dmplex_CHKERR(PetscSectionSetDof(__pyx_v_section->sec, __pyx_v_p, __pyx_v_ndof)); if (unlikely(__pyx_t_7 == ((int)-1))) __PYX_ERR(0, 472, __pyx_L1_error) ^ firedrake/dmplex.c:2282:82: warning: ‘__pyx_pybuffernd_layer_extents.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized] #define __Pyx_BufPtrCContig2d(type, buf, i0, s0, i1, s1) ((type)((char*)buf + i0 * s0) + i1) ^ firedrake/dmplex.c:7858:21: note: ‘__pyx_pybuffernd_layer_extents.diminfo[0].strides’ was declared here __Pyx_LocalBuf_ND __pyx_pybuffernd_layer_extents; ^ firedrake/dmplex.c: In function ‘__pyx_f_9firedrake_6dmplex_DMPlexGetAdjacency_Facet_Support’: firedrake/dmplex.c:27239:15: warning: ‘__pyx_v_point’ may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_t_1 = __pyx_f_9firedrake_6dmplex_CHKERR(DMPlexRestoreTransitiveClosure(__pyx_v_dm, __pyx_v_point, PETSC_TRUE, (&__pyx_v_closureSize), (&__pyx_v_closure))); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 2317, __pyx_L1_error) ^ firedrake/dmplex.c: In function ‘__pyx_pf_9firedrake_6dmplex_10get_facet_nodes.isra.78’: firedrake/dmplex.c:2282:82: warning: ‘__pyx_pybuffernd_layer_extents.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized] #define __Pyx_BufPtrCContig2d(type, buf, i0, s0, i1, s1) ((type)((char*)buf + i0 * s0) + i1) ^ firedrake/dmplex.c:9771:21: note: ‘__pyx_pybuffernd_layer_extents.diminfo[0].strides’ was declared here __Pyx_LocalBuf_ND __pyx_pybuffernd_layer_extents; ^ firedrake/dmplex.c: In function ‘__pyx_pf_9firedrake_6dmplex_12boundary_nodes.isra.77’: firedrake/dmplex.c:10809:21: warning: ‘__pyx_pybuffernd_layer_extents.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized] __Pyx_LocalBuf_ND __pyx_pybuffernd_layer_extents; ^ firedrake/dmplex.c:10791:7: warning: ‘__pyx_v_layers’ may be used uninitialized in this function [-Wmaybe-uninitialized] int __pyx_v_layers; ^ firedrake/dmplex.c: In function ‘__pyx_f_9firedrake_6dmplex_traverse_cell_string’: firedrake/dmplex.c:21821:7: warning: ‘__pyx_v_support_size’ may be used uninitialized in this function [-Wmaybe-uninitialized] for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { ^ firedrake/dmplex.c: In function ‘__pyx_f_9firedrake_6dmplex_locally_orient_quadrilateral_plex’: firedrake/dmplex.c:22177:12: warning: ‘__pyx_v_size’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (unlikely(!(__pyx_t_14 != 0))) { ^ firedrake/dmplex.c: In function ‘__pyx_pf_9firedrake_6dmplex_38quadrilateral_facet_orientations.isra.59’: firedrake/dmplex.c:24163:7: warning: ‘__pyx_v_size’ may be used uninitialized in this function [-Wmaybe-uninitialized] for (__pyx_t_49 = 0; __pyx_t_49 < __pyx_t_48; __pyx_t_49+=1) { ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.5/firedrake/dmplex.o -lpetsc -o /home/naceur/Documents/firedrake/src/firedrake/firedrake/ dmplex.cpython-35m-x86_64-linux-gnu.so -L/home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/lib -Wl,-rpath,/home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/lib -Wl,-rpath,/home/naceur/Documents/firedrake/lib cythoning firedrake/extrusion_numbering.pyx to firedrake/extrusion_numbering.c building 'firedrake.extrusion_numbering' extension mpicc -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include -I/home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc4py/include -I/home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include -I/home/naceur/Documents/firedrake/include -I/usr/include/python3.5m -c firedrake/extrusion_numbering.c -o build/temp.linux-x86_64-3.5/firedrake/extrusion_numbering.o In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4, from firedrake/extrusion_numbering.c:567: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscbag.h:4:0, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petsc.h:5, from firedrake/extrusion_numbering.c:569: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include/petscsys.h:255:0: warning: "__STDC_FORMAT_MACROS" redefined #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ ^ In file included from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/numpyconfig.h:4:0, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/npy_common.h:5, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:4, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4, from firedrake/extrusion_numbering.c:567: /home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include/numpy/_numpyconfig.h:31:0: note: this is the location of the previous definition #define __STDC_FORMAT_MACROS 1 ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.5/firedrake/extrusion_numbering.o -lpetsc -o /home/naceur/Documents/firedrake/src/firedrake/firedrake/ extrusion_numbering.cpython-35m-x86_64-linux-gnu.so -L/home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/lib -Wl,-rpath,/home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/lib -Wl,-rpath,/home/naceur/Documents/firedrake/lib cythoning firedrake/hdf5interface.pyx to firedrake/hdf5interface.c building 'firedrake.hdf5interface' extension mpicc -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/naceur/Documents/firedrake/lib/python3.5/site-packages/numpy/core/include -I/home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc4py/include -I/home/naceur/Documents/firedrake/lib/python3.5/site-packages/petsc/include -I/home/naceur/Documents/firedrake/include -I/usr/include/python3.5m -c firedrake/hdf5interface.c -o build/temp.linux-x86_64-3.5/firedrake/hdf5interface.o firedrake/hdf5interface.c:565:18: fatal error: hdf5.h: Aucun fichier ou dossier de ce type compilation terminated. warning: firedrake/dmplexinc.pxi:61:4: 'PetscSFNode' redeclared warning: firedrake/dmplex.pyx:1393:4: Buffer unpacking not optimized away. warning: firedrake/dmplex.pyx:1393:4: Buffer unpacking not optimized away. warning: firedrake/dmplex.pyx:1785:4: Buffer unpacking not optimized away. warning: firedrake/dmplex.pyx:1785:4: Buffer unpacking not optimized away. warning: firedrake/dmplex.pyx:1786:4: Buffer unpacking not optimized away. warning: firedrake/dmplex.pyx:1786:4: Buffer unpacking not optimized away. warning: firedrake/dmplexinc.pxi:61:4: 'PetscSFNode' redeclared error: command 'mpicc' failed with exit status 1 Linting firedrake codebase Linting firedrake test suite Linting firedrake scripts Running all regression tests ============================= test session starts ============================== platform linux -- Python 3.5.2, pytest-3.5.0, py-1.5.3, pluggy-0.6.0 rootdir: /home/naceur/Documents/firedrake/src/firedrake, inifile: setup.cfg collected 0 items / 1 errors ==================================== ERRORS ==================================== ______________________________ ERROR collecting _______________________________ ../../lib/python3.5/site-packages/_pytest/config.py:334: in _getconftestmodules return self._path2confmods[path] E KeyError: local('/home/naceur/Documents/firedrake/src/firedrake/tests/extrusion') During handling of the above exception, another exception occurred: ../../lib/python3.5/site-packages/_pytest/config.py:365: in _importconftest return self._conftestpath2mod[conftestpath] E KeyError: local('/home/naceur/Documents/firedrake/src/firedrake/tests/extrusion/conftest.py') During handling of the above exception, another exception occurred: ../../lib/python3.5/site-packages/_pytest/config.py:371: in _importconftest mod = conftestpath.pyimport() ../../lib/python3.5/site-packages/py/_path/local.py:668: in pyimport __import__(modname) <frozen importlib._bootstrap>:969: in _find_and_load ??? <frozen importlib._bootstrap>:958: in _find_and_load_unlocked ??? <frozen importlib._bootstrap>:664: in _load_unlocked ??? <frozen importlib._bootstrap>:634: in _load_backward_compatible ??? ../../lib/python3.5/site-packages/_pytest/assertion/rewrite.py:213: in load_module py.builtin.exec_(co, mod.__dict__) tests/extrusion/conftest.py:2: in <module> from firedrake import ExtrudedMesh, UnitSquareMesh, UnitIntervalMesh firedrake/__init__.py:27: in <module> firedrake_configuration.setup_cache_dirs() firedrake_configuration/__init__.py:46: in setup_cache_dirs os.environ["PYOP2_CACHE_DIR"] = os.path.join(config["options"]["cache_dir"], "pyop2") E TypeError: 'NoneType' object is not subscriptable During handling of the above exception, another exception occurred: ../../lib/python3.5/site-packages/py/_path/common.py:377: in visit for x in Visitor(fil, rec, ignore, bf, sort).gen(self): ../../lib/python3.5/site-packages/py/_path/common.py:418: in gen dirs = self.optsort([p for p in entries ../../lib/python3.5/site-packages/py/_path/common.py:419: in <listcomp> if p.check(dir=1) and (rec is None or rec(p))]) ../../lib/python3.5/site-packages/_pytest/main.py:434: in _recurse ihook = self.gethookproxy(path) ../../lib/python3.5/site-packages/_pytest/main.py:338: in gethookproxy my_conftestmodules = pm._getconftestmodules(fspath) ../../lib/python3.5/site-packages/_pytest/config.py:348: in _getconftestmodules mod = self._importconftest(conftestpath) ../../lib/python3.5/site-packages/_pytest/config.py:376: in _importconftest raise ConftestImportFailure(conftestpath, sys.exc_info()) E _pytest.config.ConftestImportFailure: TypeError("'NoneType' object is not subscriptable",) E File "<frozen importlib._bootstrap>", line 969, in _find_and_load E File "<frozen importlib._bootstrap>", line 958, in _find_and_load_unlocked E File "<frozen importlib._bootstrap>", line 664, in _load_unlocked E File "<frozen importlib._bootstrap>", line 634, in _load_backward_compatible E File "/home/naceur/Documents/firedrake/lib/python3.5/site-packages/_pytest/assertion/rewrite.py", line 213, in load_module E py.builtin.exec_(co, mod.__dict__) E File "/home/naceur/Documents/firedrake/src/firedrake/tests/extrusion/conftest.py", line 2, in <module> E from firedrake import ExtrudedMesh, UnitSquareMesh, UnitIntervalMesh E File "/home/naceur/Documents/firedrake/src/firedrake/firedrake/__init__.py", line 27, in <module> E firedrake_configuration.setup_cache_dirs() E File "/home/naceur/Documents/firedrake/src/firedrake/firedrake_configuration/__init__.py", line 46, in setup_cache_dirs E os.environ["PYOP2_CACHE_DIR"] = os.path.join(config["options"]["cache_dir"], "pyop2") !!!!!!!!!!!!!!!!!!! Interrupted: 1 errors during collection !!!!!!!!!!!!!!!!!!!! =========================== 1 error in 0.42 seconds ============================ Makefile:60 : la recette pour la cible « test » a échouée make: *** [test] Erreur 2 (firedrake) naceur@kahina:~/Documents/firedrake/src/firedrake$