Issue installing Firedrake
Hey All, I am trying to get Firedrake installed on a new Ubuntu 15.04 machine, and I am having some issues. I have attached the complete output from the install script, the relevant error line seems to be: configure: error: Can't find or link to the z library. Turn off netCDF-4 and opendap with --disable-netcdf-4 --disable-dap, or see config.log for errors. in the PETSc configuration, so I tried: export PETSC_CONFIGURE_OPTIONS="--download-ctetgen --download-triangle --download-chaco --download-metis --download-parmetis --download-scalapack --download-hypre --download-mumps --download-hdf5 --download-exodusii --disable-netcdf-4 --disable-dap" but that still gave the error (in fact, it seems that the install script was still trying to install netcdf-4). This is a totally clean machine, just wiped it and installed Ubuntu 15.04 so I'm not sure what is going on. Any ideas? Is there a hidden dependency for netcdf-4 or dap in the PETSc options I selected? Regards -Chris Eldred -- Chris Eldred Postdoctoral Fellow, LAGA, University of Paris 13 PhD, Atmospheric Science, Colorado State University, 2015 DOE Computational Science Graduate Fellow (Alumni) B.S. Applied Computational Physics, Carnegie Mellon University, 2009 chris.eldred@gmail.com
Hello,
I am trying to get Firedrake installed on a new Ubuntu 15.04 machine, If it is new installation of Ubuntu, why did you choose a version that has reached its end of life?
configure: error: Can't find or link to the z library. Maybe try installing the zlib1g-dev package and try again?
Regards, Miklos
On 19 Apr 2016, at 06:42, Chris Eldred <chris.eldred@gmail.com> wrote:
Hey All,
I am trying to get Firedrake installed on a new Ubuntu 15.04 machine, and I am having some issues. I have attached the complete output from the install script, the relevant error line seems to be:
configure: error: Can't find or link to the z library. Turn off netCDF-4 and opendap with --disable-netcdf-4 --disable-dap, or see config.log for errors.
in the PETSc configuration, so I tried:
export PETSC_CONFIGURE_OPTIONS="--download-ctetgen --download-triangle --download-chaco --download-metis --download-parmetis --download-scalapack --download-hypre --download-mumps --download-hdf5 --download-exodusii --disable-netcdf-4 --disable-dap"
but that still gave the error (in fact, it seems that the install script was still trying to install netcdf-4). This is a totally clean machine, just wiped it and installed Ubuntu 15.04 so I'm not sure what is going on.
Any ideas? Is there a hidden dependency for netcdf-4 or dap in the PETSc options I selected?
Regards -Chris Eldred -- Chris Eldred Postdoctoral Fellow, LAGA, University of Paris 13 PhD, Atmospheric Science, Colorado State University, 2015 DOE Computational Science Graduate Fellow (Alumni) B.S. Applied Computational Physics, Carnegie Mellon University, 2009 chris.eldred@gmail.com <firedrake.log>_______________________________________________ firedrake mailing list firedrake@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/firedrake
Hey Miklos, My bad, that should be Ubuntu 15.10! I will try adding zlib1g-dev and see if that fixes the issue. Regards, Chris On Tue, Apr 19, 2016 at 8:00 AM, Miklós Homolya <m.homolya14@imperial.ac.uk> wrote:
Hello,
I am trying to get Firedrake installed on a new Ubuntu 15.04 machine, If it is new installation of Ubuntu, why did you choose a version that has reached its end of life?
configure: error: Can't find or link to the z library. Maybe try installing the zlib1g-dev package and try again?
Regards, Miklos
On 19 Apr 2016, at 06:42, Chris Eldred <chris.eldred@gmail.com> wrote:
Hey All,
I am trying to get Firedrake installed on a new Ubuntu 15.04 machine, and I am having some issues. I have attached the complete output from the install script, the relevant error line seems to be:
configure: error: Can't find or link to the z library. Turn off netCDF-4 and opendap with --disable-netcdf-4 --disable-dap, or see config.log for errors.
in the PETSc configuration, so I tried:
export PETSC_CONFIGURE_OPTIONS="--download-ctetgen --download-triangle --download-chaco --download-metis --download-parmetis --download-scalapack --download-hypre --download-mumps --download-hdf5 --download-exodusii --disable-netcdf-4 --disable-dap"
but that still gave the error (in fact, it seems that the install script was still trying to install netcdf-4). This is a totally clean machine, just wiped it and installed Ubuntu 15.04 so I'm not sure what is going on.
Any ideas? Is there a hidden dependency for netcdf-4 or dap in the PETSc options I selected?
Regards -Chris Eldred -- Chris Eldred Postdoctoral Fellow, LAGA, University of Paris 13 PhD, Atmospheric Science, Colorado State University, 2015 DOE Computational Science Graduate Fellow (Alumni) B.S. Applied Computational Physics, Carnegie Mellon University, 2009 chris.eldred@gmail.com <firedrake.log>_______________________________________________ firedrake mailing list firedrake@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/firedrake
_______________________________________________ firedrake mailing list firedrake@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/firedrake
-- Chris Eldred Postdoctoral Fellow, LAGA, University of Paris 13 PhD, Atmospheric Science, Colorado State University, 2015 DOE Computational Science Graduate Fellow (Alumni) B.S. Applied Computational Physics, Carnegie Mellon University, 2009 chris.eldred@gmail.com
participants (2)
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Chris Eldred
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Miklós Homolya