Re: [firedrake] firedrake-install fails with hypre
It seems I spoke too soon. Firedrake-install works for me but the manual configure Tuomas posted fails. Intriguing... On Fri, 9 Oct 2015 at 10:49 Ham, David A <david.ham@imperial.ac.uk> wrote:
I can reproduce this error. Bizarrely it's an unresolved reference to ceil somewhere deep in Hypre. I have no idea why. Looking further now. david
On Thu, 8 Oct 2015 at 22:39 Justin Chang <jychang48@gmail.com> wrote:
Oh, I think it would only show up if you successfully installed petsc. Could be wrong though
On Thu, Oct 8, 2015 at 3:33 PM, Tuomas Karna <tuomas.karna@gmail.com> wrote:
Hi Justin,
I haven't used hypre with PETSc before. I'll try configuring it with the same options.
Actually, show us what's in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/petsc/conf/configure.log
I tried to look for the cofigure.log but it's not under /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/ ...
- Tuomas
On 10/08/2015 02:29 PM, Justin Chang wrote:
Actually, show us what's in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/petsc/conf/configure.log
On Thu, Oct 8, 2015 at 3:28 PM, Justin Chang <jychang48@gmail.com> wrote:
In your already installed PETSc version, did you have HYPRE configured with the same MPI compilers? If not, see if you can reproduce this error and see what's going on in the configure.log
On Thu, Oct 8, 2015 at 3:15 PM, Tuomas Karna <tuomas.karna@gmail.com> wrote:
Hi all,
I'm trying to install firedrake with python firedrake-install --developer --log --disable_ssh --no_package_manager
and I get the following error when building PETSc (full log attached):
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
-------------------------------------------------------------------------------
Downloaded hypre could not be used. Please check install in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc
*******************************************************************************
Any ideas? I'm on Ubuntu 15.04, I have PETSc installed but I've unset PETSC_DIR.
- Tuomas
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Interesting. Installing with with --minimal_petsc works fine. If I build petsc with --download-hypre I see the same ceil error: Cloned the same petsc (bitbucket.org/mapdes/petsc.git branch firedrake commit f2b0407) and configured with the same options: ./configure --prefix=/home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc PETSC_ARCH=arch-python-linux-x86_64 --with-shared-libraries=1 --with-debugging=0 --with-c2html=0 --with-cc=/usr/bin/mpicc --with-cxx=/usr/bin/mpicxx --with-fc=0 --with-sowing=0 --download-ctetgen --download-triangle --download-chaco --download-metis --download-parmetis --download-scalapack --download-hypre --download-mumps --download-netcdf --download-hdf5 --download-exodusii With this I get error: ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Cannot use scalapack without Fortran, make sure you do NOT have --with-fc=0 ******************************************************************************* If I remove --download-mumps and --download-scalapack, I get the same hypre error as with firedrake-install: ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Downloaded hypre could not be used. Please check install in /home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc ******************************************************************************* configure.log (too large to attach) has more details: Possible ERROR while running linker: exit code 256 stderr: /home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc/lib /libHYPRE.a(exchange_data.o): In function `hypre_DataExchangeList': /home/tuomas/sources/petsc/firedrake/arch-python-linux-x86_64/externalpackages/h ypre-2.10.0b-p1/src/utilities/exchange_data.c:205: undefined reference to `ceil' which would suggest that the linker is missing some libs? - Tuomas On 10/09/2015 03:08 AM, David Ham wrote:
It seems I spoke too soon. Firedrake-install works for me but the manual configure Tuomas posted fails. Intriguing...
On Fri, 9 Oct 2015 at 10:49 Ham, David A <david.ham@imperial.ac.uk <mailto:david.ham@imperial.ac.uk>> wrote:
I can reproduce this error. Bizarrely it's an unresolved reference to ceil somewhere deep in Hypre. I have no idea why. Looking further now. david
On Thu, 8 Oct 2015 at 22:39 Justin Chang <jychang48@gmail.com <mailto:jychang48@gmail.com>> wrote:
Oh, I think it would only show up if you successfully installed petsc. Could be wrong though
On Thu, Oct 8, 2015 at 3:33 PM, Tuomas Karna <tuomas.karna@gmail.com <mailto:tuomas.karna@gmail.com>> wrote:
Hi Justin,
I haven't used hypre with PETSc before. I'll try configuring it with the same options.
Actually, show us what's in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/petsc/conf/configure.log
I tried to look for the cofigure.log but it's not under /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/ ...
- Tuomas
On 10/08/2015 02:29 PM, Justin Chang wrote:
Actually, show us what's in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/petsc/conf/configure.log
On Thu, Oct 8, 2015 at 3:28 PM, Justin Chang <jychang48@gmail.com <mailto:jychang48@gmail.com>> wrote:
In your already installed PETSc version, did you have HYPRE configured with the same MPI compilers? If not, see if you can reproduce this error and see what's going on in the configure.log
On Thu, Oct 8, 2015 at 3:15 PM, Tuomas Karna <tuomas.karna@gmail.com <mailto:tuomas.karna@gmail.com>> wrote:
Hi all,
I'm trying to install firedrake with python firedrake-install --developer --log --disable_ssh --no_package_manager
and I get the following error when building PETSc (full log attached):
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
-------------------------------------------------------------------------------
Downloaded hypre could not be used. Please check install in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc
*******************************************************************************
Any ideas? I'm on Ubuntu 15.04, I have PETSc installed but I've unset PETSC_DIR.
- Tuomas
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It could have something to do with the mpi/gcc version you are using, maybe it's not compatible with HYPRE? Again it depends what the configure.log from your stand-alone PETSc tells you. Send the configure.log to petsc-maint@mcs.anl.gov and they should tell you what the problem is exactly. On Fri, Oct 9, 2015 at 11:31 AM, Tuomas Karna <tuomas.karna@gmail.com> wrote:
Interesting. Installing with with --minimal_petsc works fine.
If I build petsc with --download-hypre I see the same ceil error:
Cloned the same petsc (bitbucket.org/mapdes/petsc.git branch firedrake commit f2b0407) and configured with the same options:
./configure --prefix=/home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc PETSC_ARCH=arch-python-linux-x86_64 --with-shared-libraries=1 --with-debugging=0 --with-c2html=0 --with-cc=/usr/bin/mpicc --with-cxx=/usr/bin/mpicxx --with-fc=0 --with-sowing=0 --download-ctetgen --download-triangle --download-chaco --download-metis --download-parmetis --download-scalapack --download-hypre --download-mumps --download-netcdf --download-hdf5 --download-exodusii
With this I get error:
******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
------------------------------------------------------------------------------- Cannot use scalapack without Fortran, make sure you do NOT have --with-fc=0
*******************************************************************************
If I remove --download-mumps and --download-scalapack, I get the same hypre error as with firedrake-install:
******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
------------------------------------------------------------------------------- Downloaded hypre could not be used. Please check install in /home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc
*******************************************************************************
configure.log (too large to attach) has more details:
Possible ERROR while running linker: exit code 256 stderr:
/home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc/lib /libHYPRE.a(exchange_data.o): In function `hypre_DataExchangeList':
/home/tuomas/sources/petsc/firedrake/arch-python-linux-x86_64/externalpackages/h ypre-2.10.0b-p1/src/utilities/exchange_data.c:205: undefined reference to `ceil'
which would suggest that the linker is missing some libs?
- Tuomas
On 10/09/2015 03:08 AM, David Ham wrote:
It seems I spoke too soon. Firedrake-install works for me but the manual configure Tuomas posted fails. Intriguing...
On Fri, 9 Oct 2015 at 10:49 Ham, David A < <david.ham@imperial.ac.uk> david.ham@imperial.ac.uk> wrote:
I can reproduce this error. Bizarrely it's an unresolved reference to ceil somewhere deep in Hypre. I have no idea why. Looking further now. david
On Thu, 8 Oct 2015 at 22:39 Justin Chang <jychang48@gmail.com> wrote:
Oh, I think it would only show up if you successfully installed petsc. Could be wrong though
On Thu, Oct 8, 2015 at 3:33 PM, Tuomas Karna <tuomas.karna@gmail.com> wrote:
Hi Justin,
I haven't used hypre with PETSc before. I'll try configuring it with the same options.
Actually, show us what's in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/petsc/conf/configure.log
I tried to look for the cofigure.log but it's not under /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/ ...
- Tuomas
On 10/08/2015 02:29 PM, Justin Chang wrote:
Actually, show us what's in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/petsc/conf/configure.log
On Thu, Oct 8, 2015 at 3:28 PM, Justin Chang <jychang48@gmail.com> wrote:
In your already installed PETSc version, did you have HYPRE configured with the same MPI compilers? If not, see if you can reproduce this error and see what's going on in the configure.log
On Thu, Oct 8, 2015 at 3:15 PM, Tuomas Karna < <tuomas.karna@gmail.com>tuomas.karna@gmail.com> wrote:
Hi all,
I'm trying to install firedrake with python firedrake-install --developer --log --disable_ssh --no_package_manager
and I get the following error when building PETSc (full log attached):
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
-------------------------------------------------------------------------------
Downloaded hypre could not be used. Please check install in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc
*******************************************************************************
Any ideas? I'm on Ubuntu 15.04, I have PETSc installed but I've unset PETSC_DIR.
- Tuomas
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And there's no attachment file size limitation for that mailing list too, so you can safely send the entire configure.log to those guys ;) On Fri, Oct 9, 2015 at 11:36 AM, Justin Chang <jychang48@gmail.com> wrote:
It could have something to do with the mpi/gcc version you are using, maybe it's not compatible with HYPRE? Again it depends what the configure.log from your stand-alone PETSc tells you.
Send the configure.log to petsc-maint@mcs.anl.gov and they should tell you what the problem is exactly.
On Fri, Oct 9, 2015 at 11:31 AM, Tuomas Karna <tuomas.karna@gmail.com> wrote:
Interesting. Installing with with --minimal_petsc works fine.
If I build petsc with --download-hypre I see the same ceil error:
Cloned the same petsc (bitbucket.org/mapdes/petsc.git branch firedrake commit f2b0407) and configured with the same options:
./configure --prefix=/home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc PETSC_ARCH=arch-python-linux-x86_64 --with-shared-libraries=1 --with-debugging=0 --with-c2html=0 --with-cc=/usr/bin/mpicc --with-cxx=/usr/bin/mpicxx --with-fc=0 --with-sowing=0 --download-ctetgen --download-triangle --download-chaco --download-metis --download-parmetis --download-scalapack --download-hypre --download-mumps --download-netcdf --download-hdf5 --download-exodusii
With this I get error:
******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
------------------------------------------------------------------------------- Cannot use scalapack without Fortran, make sure you do NOT have --with-fc=0
*******************************************************************************
If I remove --download-mumps and --download-scalapack, I get the same hypre error as with firedrake-install:
******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
------------------------------------------------------------------------------- Downloaded hypre could not be used. Please check install in /home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc
*******************************************************************************
configure.log (too large to attach) has more details:
Possible ERROR while running linker: exit code 256 stderr:
/home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc/lib /libHYPRE.a(exchange_data.o): In function `hypre_DataExchangeList':
/home/tuomas/sources/petsc/firedrake/arch-python-linux-x86_64/externalpackages/h ypre-2.10.0b-p1/src/utilities/exchange_data.c:205: undefined reference to `ceil'
which would suggest that the linker is missing some libs?
- Tuomas
On 10/09/2015 03:08 AM, David Ham wrote:
It seems I spoke too soon. Firedrake-install works for me but the manual configure Tuomas posted fails. Intriguing...
On Fri, 9 Oct 2015 at 10:49 Ham, David A < <david.ham@imperial.ac.uk> david.ham@imperial.ac.uk> wrote:
I can reproduce this error. Bizarrely it's an unresolved reference to ceil somewhere deep in Hypre. I have no idea why. Looking further now. david
On Thu, 8 Oct 2015 at 22:39 Justin Chang <jychang48@gmail.com> wrote:
Oh, I think it would only show up if you successfully installed petsc. Could be wrong though
On Thu, Oct 8, 2015 at 3:33 PM, Tuomas Karna <tuomas.karna@gmail.com> wrote:
Hi Justin,
I haven't used hypre with PETSc before. I'll try configuring it with the same options.
Actually, show us what's in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/petsc/conf/configure.log
I tried to look for the cofigure.log but it's not under /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/ ...
- Tuomas
On 10/08/2015 02:29 PM, Justin Chang wrote:
Actually, show us what's in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/petsc/conf/configure.log
On Thu, Oct 8, 2015 at 3:28 PM, Justin Chang <jychang48@gmail.com> wrote:
In your already installed PETSc version, did you have HYPRE configured with the same MPI compilers? If not, see if you can reproduce this error and see what's going on in the configure.log
On Thu, Oct 8, 2015 at 3:15 PM, Tuomas Karna < <tuomas.karna@gmail.com>tuomas.karna@gmail.com> wrote:
> Hi all, > > I'm trying to install firedrake with > python firedrake-install --developer --log --disable_ssh > --no_package_manager > > and I get the following error when building PETSc (full log > attached): > > > ******************************************************************************* > > UNABLE to CONFIGURE with GIVEN OPTIONS (see > configure.log for details): > > > ------------------------------------------------------------------------------- > > Downloaded hypre could not be used. Please check install in > /home/tuomas/firedrake/lib/python2.7/site-packages/petsc > > > ******************************************************************************* > > Any ideas? I'm on Ubuntu 15.04, I have PETSc installed but I've > unset PETSC_DIR. > > > - Tuomas > > > _______________________________________________ > firedrake mailing list > firedrake@imperial.ac.uk > https://mailman.ic.ac.uk/mailman/listinfo/firedrake > >
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/home/tuomas/sources/petsc/firedrake/arch-python-linux-x86_64/externalpackages/hypre-2.10.0b-p1/src/utilities/exchange_data.c:205: undefined reference to `ceil' which would suggest that the linker is missing some libs?
As far as I can parse it, this isn't a linker, but a compiler error. Please add #include <math.h> somewhere at the beginning of exchange_data.c. Then cd /home/tuomas/sources/petsc/firedrake/arch-python-linux-x86_64/externalpackages/hypre-2.10.0b-p1/ make and after this try again building configuring and building petsc (don't clean the externalpackages directory). Regards, Miklos ________________________________ From: firedrake-bounces@imperial.ac.uk [firedrake-bounces@imperial.ac.uk] on behalf of Tuomas Karna [tuomas.karna@gmail.com] Sent: 09 October 2015 18:31 To: firedrake Subject: Re: [firedrake] firedrake-install fails with hypre Interesting. Installing with with --minimal_petsc works fine. If I build petsc with --download-hypre I see the same ceil error: Cloned the same petsc (bitbucket.org/mapdes/petsc.git branch firedrake commit f2b0407) and configured with the same options: ./configure --prefix=/home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc PETSC_ARCH=arch-python-linux-x86_64 --with-shared-libraries=1 --with-debugging=0 --with-c2html=0 --with-cc=/usr/bin/mpicc --with-cxx=/usr/bin/mpicxx --with-fc=0 --with-sowing=0 --download-ctetgen --download-triangle --download-chaco --download-metis --download-parmetis --download-scalapack --download-hypre --download-mumps --download-netcdf --download-hdf5 --download-exodusii With this I get error: ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Cannot use scalapack without Fortran, make sure you do NOT have --with-fc=0 ******************************************************************************* If I remove --download-mumps and --download-scalapack, I get the same hypre error as with firedrake-install: ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Downloaded hypre could not be used. Please check install in /home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc ******************************************************************************* configure.log (too large to attach) has more details: Possible ERROR while running linker: exit code 256 stderr: /home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc/lib /libHYPRE.a(exchange_data.o): In function `hypre_DataExchangeList': /home/tuomas/sources/petsc/firedrake/arch-python-linux-x86_64/externalpackages/h ypre-2.10.0b-p1/src/utilities/exchange_data.c:205: undefined reference to `ceil' which would suggest that the linker is missing some libs? - Tuomas On 10/09/2015 03:08 AM, David Ham wrote: It seems I spoke too soon. Firedrake-install works for me but the manual configure Tuomas posted fails. Intriguing... On Fri, 9 Oct 2015 at 10:49 Ham, David A <<mailto:david.ham@imperial.ac.uk>david.ham@imperial.ac.uk<mailto:david.ham@imperial.ac.uk>> wrote: I can reproduce this error. Bizarrely it's an unresolved reference to ceil somewhere deep in Hypre. I have no idea why. Looking further now. david On Thu, 8 Oct 2015 at 22:39 Justin Chang <jychang48@gmail.com<mailto:jychang48@gmail.com>> wrote: Oh, I think it would only show up if you successfully installed petsc. Could be wrong though On Thu, Oct 8, 2015 at 3:33 PM, Tuomas Karna <tuomas.karna@gmail.com<mailto:tuomas.karna@gmail.com>> wrote: Hi Justin, I haven't used hypre with PETSc before. I'll try configuring it with the same options. Actually, show us what's in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/petsc/conf/configure.log I tried to look for the cofigure.log but it's not under /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/ ... - Tuomas On 10/08/2015 02:29 PM, Justin Chang wrote: Actually, show us what's in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/petsc/conf/configure.log On Thu, Oct 8, 2015 at 3:28 PM, Justin Chang <jychang48@gmail.com<mailto:jychang48@gmail.com>> wrote: In your already installed PETSc version, did you have HYPRE configured with the same MPI compilers? If not, see if you can reproduce this error and see what's going on in the configure.log On Thu, Oct 8, 2015 at 3:15 PM, Tuomas Karna <<mailto:tuomas.karna@gmail.com>tuomas.karna@gmail.com<mailto:tuomas.karna@gmail.com>> wrote: Hi all, I'm trying to install firedrake with python firedrake-install --developer --log --disable_ssh --no_package_manager and I get the following error when building PETSc (full log attached): ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Downloaded hypre could not be used. Please check install in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc ******************************************************************************* Any ideas? I'm on Ubuntu 15.04, I have PETSc installed but I've unset PETSC_DIR. - Tuomas _______________________________________________ firedrake mailing list firedrake@imperial.ac.uk<mailto:firedrake@imperial.ac.uk> https://mailman.ic.ac.uk/mailman/listinfo/firedrake _______________________________________________ firedrake mailing list firedrake@imperial.ac.uk<mailto:firedrake@imperial.ac.uk> https://mailman.ic.ac.uk/mailman/listinfo/firedrake _______________________________________________ firedrake mailing list firedrake@imperial.ac.uk<mailto:firedrake@imperial.ac.uk> https://mailman.ic.ac.uk/mailman/listinfo/firedrake _______________________________________________ firedrake mailing list firedrake@imperial.ac.uk<mailto:firedrake@imperial.ac.uk> https://mailman.ic.ac.uk/mailman/listinfo/firedrake
Hi Miklos, #include <math.h> is already there. I'll check if I can reproduce this with the current PETSc master/next branches and if so I'll ping their mailing list. - Tuomas On 10/09/2015 12:13 PM, Homolya, Miklós wrote:
/home/tuomas/sources/petsc/firedrake/arch-python-linux-x86_64/externalpackages/hypre-2.10.0b-p1/src/utilities/exchange_data.c:205: undefined reference to `ceil' which would suggest that the linker is missing some libs? As far as I can parse it, this isn't a linker, but a compiler error. Please add
#include <math.h>
somewhere at the beginning of exchange_data.c. Then
cd /home/tuomas/sources/petsc/firedrake/arch-python-linux-x86_64/externalpackages/hypre-2.10.0b-p1/ make
and after this try again building configuring and building petsc (don't clean the externalpackages directory).
Regards, Miklos
________________________________ From: firedrake-bounces@imperial.ac.uk [firedrake-bounces@imperial.ac.uk] on behalf of Tuomas Karna [tuomas.karna@gmail.com] Sent: 09 October 2015 18:31 To: firedrake Subject: Re: [firedrake] firedrake-install fails with hypre
Interesting. Installing with with --minimal_petsc works fine.
If I build petsc with --download-hypre I see the same ceil error:
Cloned the same petsc (bitbucket.org/mapdes/petsc.git branch firedrake commit f2b0407) and configured with the same options:
./configure --prefix=/home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc PETSC_ARCH=arch-python-linux-x86_64 --with-shared-libraries=1 --with-debugging=0 --with-c2html=0 --with-cc=/usr/bin/mpicc --with-cxx=/usr/bin/mpicxx --with-fc=0 --with-sowing=0 --download-ctetgen --download-triangle --download-chaco --download-metis --download-parmetis --download-scalapack --download-hypre --download-mumps --download-netcdf --download-hdf5 --download-exodusii
With this I get error: ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Cannot use scalapack without Fortran, make sure you do NOT have --with-fc=0 *******************************************************************************
If I remove --download-mumps and --download-scalapack, I get the same hypre error as with firedrake-install:
******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Downloaded hypre could not be used. Please check install in /home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc *******************************************************************************
configure.log (too large to attach) has more details:
Possible ERROR while running linker: exit code 256 stderr: /home/tuomas/sources/petsc/firedrake/build/lib/python2.7/site-packages/petsc/lib /libHYPRE.a(exchange_data.o): In function `hypre_DataExchangeList': /home/tuomas/sources/petsc/firedrake/arch-python-linux-x86_64/externalpackages/h ypre-2.10.0b-p1/src/utilities/exchange_data.c:205: undefined reference to `ceil'
which would suggest that the linker is missing some libs?
- Tuomas
On 10/09/2015 03:08 AM, David Ham wrote: It seems I spoke too soon. Firedrake-install works for me but the manual configure Tuomas posted fails. Intriguing...
On Fri, 9 Oct 2015 at 10:49 Ham, David A <<mailto:david.ham@imperial.ac.uk>david.ham@imperial.ac.uk<mailto:david.ham@imperial.ac.uk>> wrote: I can reproduce this error. Bizarrely it's an unresolved reference to ceil somewhere deep in Hypre. I have no idea why. Looking further now. david
On Thu, 8 Oct 2015 at 22:39 Justin Chang <jychang48@gmail.com<mailto:jychang48@gmail.com>> wrote: Oh, I think it would only show up if you successfully installed petsc. Could be wrong though
On Thu, Oct 8, 2015 at 3:33 PM, Tuomas Karna <tuomas.karna@gmail.com<mailto:tuomas.karna@gmail.com>> wrote: Hi Justin,
I haven't used hypre with PETSc before. I'll try configuring it with the same options.
Actually, show us what's in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/petsc/conf/configure.log I tried to look for the cofigure.log but it's not under /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/ ...
- Tuomas
On 10/08/2015 02:29 PM, Justin Chang wrote: Actually, show us what's in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc/lib/petsc/conf/configure.log
On Thu, Oct 8, 2015 at 3:28 PM, Justin Chang <jychang48@gmail.com<mailto:jychang48@gmail.com>> wrote: In your already installed PETSc version, did you have HYPRE configured with the same MPI compilers? If not, see if you can reproduce this error and see what's going on in the configure.log
On Thu, Oct 8, 2015 at 3:15 PM, Tuomas Karna <<mailto:tuomas.karna@gmail.com>tuomas.karna@gmail.com<mailto:tuomas.karna@gmail.com>> wrote: Hi all,
I'm trying to install firedrake with python firedrake-install --developer --log --disable_ssh --no_package_manager
and I get the following error when building PETSc (full log attached):
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
-------------------------------------------------------------------------------
Downloaded hypre could not be used. Please check install in /home/tuomas/firedrake/lib/python2.7/site-packages/petsc
*******************************************************************************
Any ideas? I'm on Ubuntu 15.04, I have PETSc installed but I've unset PETSC_DIR.
- Tuomas
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participants (4)
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David Ham
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Homolya, Miklós
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Justin Chang
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Tuomas Karna