Caught signal number 15 Terminate
Dear Firedrakes, My computations get killed with the following exception: COFFEE finished in 0.0201869 seconds (flops: 92 -> 92) COFFEE finished in 0.0305271 seconds (flops: 92 -> 92) COFFEE finished in 0.0411251 seconds (flops: 92 -> 92) [1] pyop2:INFO Solving nonlinear variational problem... [2] pyop2:INFO Solving nonlinear variational problem... [0] pyop2:INFO Solving nonlinear variational problem... [3] pyop2:INFO Solving nonlinear variational problem... [0] pyop2:INFO Compiling wrapper... [0] pyop2:INFO Compiling wrapper...done [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [2]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [2]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [2]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [2]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [2]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [1]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [1]PETSC ERROR: to get more information on the crash. -------------------------------------------------------------------------- mpirun noticed that process rank 3 with PID 6682 on node comp-pc3234 exited on signal 9 (Killed). -------------------------------------------------------------------------- why does this happen/can it be avoided? Best, Fryderyk
On 30 May 2016, at 13:20, Fryderyk Wilczynski <scfw@leeds.ac.uk> wrote:
Dear Firedrakes,
My computations get killed with the following exception:
COFFEE finished in 0.0201869 seconds (flops: 92 -> 92) COFFEE finished in 0.0305271 seconds (flops: 92 -> 92) COFFEE finished in 0.0411251 seconds (flops: 92 -> 92) [1] pyop2:INFO Solving nonlinear variational problem... [2] pyop2:INFO Solving nonlinear variational problem...
...
[1]PETSC ERROR: to get more information on the crash. -------------------------------------------------------------------------- mpirun noticed that process rank 3 with PID 6682 on node comp-pc3234 exited on signal 9 (Killed).
Probably this happens because of a segfault somewhere in the code. Are you using Expressions in your code that maybe are not safe (overwriting memory somewhere). Does this happen in serial? It is hard to know more without knowing exactly what you are doing. Lawrence
participants (2)
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                Fryderyk Wilczynski
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                Lawrence Mitchell