Firedrake failed to install - failed to clone petsc
Hello, I've tried to install Firedrake on macomp001 in my home directory to use on the cluster but I am getting thw error message below. This is with `-v --disable-ssh`. Please let me know how to try to debug this. Thanks Alex Terenin Cloning petsc Failed to clone petsc branch firedrake. Traceback (most recent call last): File "firedrake-install", line 453, in git_clone raise InstallError("Skipping ssh clone because --disable-ssh") __main__.InstallError: Skipping ssh clone because --disable-ssh During handling of the above exception, another exception occurred: Traceback (most recent call last): File "firedrake-install", line 1056, in <module> packages = clone_dependencies("PyOP2") + packages File "firedrake-install", line 493, in clone_dependencies deps.append(git_clone(dep.strip())) File "firedrake-install", line 460, in git_clone check_call(["git", "clone", "-q", git_url(plain_url, "https")]) File "firedrake-install", line 366, in check_call log.debug(subprocess.check_output(arguments, stderr=subprocess.STDOUT, env=env).decode()) File "/usr/lib/python3.5/subprocess.py", line 626, in check_output **kwargs).stdout File "/usr/lib/python3.5/subprocess.py", line 708, in run output=stdout, stderr=stderr) subprocess.CalledProcessError: Command '['git', 'clone', '-q', 'https://github.com/firedrakeproject/petsc.git']' returned non-zero exit status 128
Dear Alexander,
On 20 Jul 2018, at 13:57, Terenin, Alexander <a.terenin17@imperial.ac.uk> wrote:
Hello,
I've tried to install Firedrake on macomp001 in my home directory to use on the cluster but I am getting thw error message below.
This is with `-v --disable-ssh`. Please let me know how to try to debug this. subprocess.CalledProcessError: Command '['git', 'clone', '-q', 'https://github.com/firedrakeproject/petsc.git']' returned non-zero exit status 128
This looks like git does not work properly? What happens when you run: git clone -q https://github.com/firedrakeproject/petsc.git from the terminal? Cheers, Lawrence
I get the following - it clones successfully on my local machine - will email Andy Thomas to ask why macomp001 is failing to clone something from GitHub. fatal: premature end of pack file, 41 bytes missing fatal: recursion detected in die handler fatal: index-pack failed On Jul 20, 2018, at 2:14 PM, Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk<mailto:lawrence.mitchell@imperial.ac.uk>> wrote: git clone -q https://github.com/firedrakeproject/petsc.git
On 20 Jul 2018, at 14:18, Terenin, Alexander <a.terenin17@imperial.ac.uk> wrote:
I get the following - it clones successfully on my local machine - will email Andy Thomas to ask why macomp001 is failing to clone something from GitHub.
fatal: premature end of pack file, 41 bytes missing fatal: recursion detected in die handler fatal: index-pack failed
If you run without "-q", there will be a bit more information. Perhaps you are doing this in your home directory and have run out of quota? What does "quota -s" say? Cheers, Lawrence
participants (2)
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Lawrence Mitchell
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Terenin, Alexander