EUCLID BoomerAMG smoother on ARCHER
Hi, I just tried to run the PETSc fieldsplit solver with the EUCLID smoother for the BoomerAMG preconditioner on ARCHER, and I get this error message: ============= error stack trace ==================== [18] ERROR: global index 112 not found in map Numbering_dhGlobalToLocal file= Numbering_dh.c line= 175 [18] called from: Factor_dhSolveSetup file= Factor_dh.c line= 555 [18] called from: Euclid_dhSetup file= Euclid_dh.c line= 282 [18] called from: HYPRE_EuclidSetup file= HYPRE_parcsr_Euclid.c line= 278 any idea what might cause this? I can run this without problems on my laptop. Thanks, Eike
-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On 13/05/15 11:00, Eike Mueller wrote:
Hi,
I just tried to run the PETSc fieldsplit solver with the EUCLID smoother for the BoomerAMG preconditioner on ARCHER, and I get this error message:
============= error stack trace ==================== [18] ERROR: global index 112 not found in map
Numbering_dhGlobalToLocal file= Numbering_dh.c line= 175
[18] called from: Factor_dhSolveSetup file= Factor_dh.c line= 555 [18] called from: Euclid_dhSetup file= Euclid_dh.c line= 282 [18] called from: HYPRE_EuclidSetup file= HYPRE_parcsr_Euclid.c line= 278
any idea what might cause this?
I can run this without problems on my laptop.
This looks like it's happened deep inside hypre itself. So I'm sort of out of ideas. Does this run, at the same scale, on your laptop successfully? Lawrence -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQEcBAEBAgAGBQJVUyWlAAoJECOc1kQ8PEYvdz0H/11HfQy0p7LO1DpGyoXPGtEx 25rhNltEiK/Myv//IjSvgjiApgvCSTNLcgqJUtj86OMiSPmATadT+uVKfEk8wG/G yv2bm11GRQxOX79EV4skfIdba6X2/Oiekb5ktmF0GL8iav3tYUVOHbRLYBmJExT1 YMihip/CFuvdzuoUCbFGGlcni9IJAArmADyJEdVmEUEV258eMVtPYiGFEdi8ajM9 H5X+f5SVRuW77lKg+PhSzgjaRRvJUfLeDE0CECHS0sLpWT5EZF+KjhBq5g6a7rIq 4iE4QE7TMPjGtL8tzqXEPJhqb9NMG+29BI+V+SYcT/aJBky2pOTC65rBm6kXT8g= =wTeg -----END PGP SIGNATURE-----
Hi Lawrence, that's what I feared, an issue somewhere deep inside hypre/PETSc... I just reran sequentially on ARCHER with exactly the same setup as on my laptop, and then it does work. So maybe the problem is too large, I will try to reproduce the issue on my laptop. Thanks a lot anyway, Eike ________________________________________ From: firedrake-bounces@imperial.ac.uk <firedrake-bounces@imperial.ac.uk> on behalf of Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk> Sent: 13 May 2015 11:21 To: firedrake@imperial.ac.uk Subject: Re: [firedrake] EUCLID BoomerAMG smoother on ARCHER -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On 13/05/15 11:00, Eike Mueller wrote:
Hi,
I just tried to run the PETSc fieldsplit solver with the EUCLID smoother for the BoomerAMG preconditioner on ARCHER, and I get this error message:
============= error stack trace ==================== [18] ERROR: global index 112 not found in map
Numbering_dhGlobalToLocal file= Numbering_dh.c line= 175
[18] called from: Factor_dhSolveSetup file= Factor_dh.c line= 555 [18] called from: Euclid_dhSetup file= Euclid_dh.c line= 282 [18] called from: HYPRE_EuclidSetup file= HYPRE_parcsr_Euclid.c line= 278
any idea what might cause this?
I can run this without problems on my laptop.
This looks like it's happened deep inside hypre itself. So I'm sort of out of ideas. Does this run, at the same scale, on your laptop successfully? Lawrence -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQEcBAEBAgAGBQJVUyWlAAoJECOc1kQ8PEYvdz0H/11HfQy0p7LO1DpGyoXPGtEx 25rhNltEiK/Myv//IjSvgjiApgvCSTNLcgqJUtj86OMiSPmATadT+uVKfEk8wG/G yv2bm11GRQxOX79EV4skfIdba6X2/Oiekb5ktmF0GL8iav3tYUVOHbRLYBmJExT1 YMihip/CFuvdzuoUCbFGGlcni9IJAArmADyJEdVmEUEV258eMVtPYiGFEdi8ajM9 H5X+f5SVRuW77lKg+PhSzgjaRRvJUfLeDE0CECHS0sLpWT5EZF+KjhBq5g6a7rIq 4iE4QE7TMPjGtL8tzqXEPJhqb9NMG+29BI+V+SYcT/aJBky2pOTC65rBm6kXT8g= =wTeg -----END PGP SIGNATURE----- _______________________________________________ firedrake mailing list firedrake@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/firedrake
Hi Lawrence, as an additional test I just tried to re-run PETSc’s ex6 on 24 cores with Euclid. Here it does seem to work, the command I use is: mpirun -n 24 ./ex6 -f -f helmholtz-sphere.dat -ksp_type cg -ksp_convergence_test skip -ksp_max_it 2 -ksp_monitor -pc_hypre_type boomeramg -pc_type hypre -pc_hypre_boomeramg_smooth_type Euclid -log_summary -ksp_view As a sanity check, is there a way of writing out the pressure matrix for the system that I currently solve with the fieldsplit preconditioner and run it through ex6 exactly like above? Thanks, Eike -- Dr Eike Hermann Mueller Lecturer in Scientific Computing Department of Mathematical Sciences University of Bath Bath BA2 7AY, United Kingdom +44 1225 38 6241 e.mueller@bath.ac.uk<mailto:e.mueller@bath.ac.uk> http://people.bath.ac.uk/em459/ On 13 May 2015, at 12:34, Eike Mueller <E.Mueller@bath.ac.uk<mailto:E.Mueller@bath.ac.uk>> wrote: Hi Lawrence, that's what I feared, an issue somewhere deep inside hypre/PETSc... I just reran sequentially on ARCHER with exactly the same setup as on my laptop, and then it does work. So maybe the problem is too large, I will try to reproduce the issue on my laptop. Thanks a lot anyway, Eike ________________________________________ From: firedrake-bounces@imperial.ac.uk<mailto:firedrake-bounces@imperial.ac.uk> <firedrake-bounces@imperial.ac.uk<mailto:firedrake-bounces@imperial.ac.uk>> on behalf of Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk<mailto:lawrence.mitchell@imperial.ac.uk>> Sent: 13 May 2015 11:21 To: firedrake@imperial.ac.uk<mailto:firedrake@imperial.ac.uk> Subject: Re: [firedrake] EUCLID BoomerAMG smoother on ARCHER -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On 13/05/15 11:00, Eike Mueller wrote: Hi, I just tried to run the PETSc fieldsplit solver with the EUCLID smoother for the BoomerAMG preconditioner on ARCHER, and I get this error message: ============= error stack trace ==================== [18] ERROR: global index 112 not found in map Numbering_dhGlobalToLocal file= Numbering_dh.c line= 175 [18] called from: Factor_dhSolveSetup file= Factor_dh.c line= 555 [18] called from: Euclid_dhSetup file= Euclid_dh.c line= 282 [18] called from: HYPRE_EuclidSetup file= HYPRE_parcsr_Euclid.c line= 278 any idea what might cause this? I can run this without problems on my laptop. This looks like it's happened deep inside hypre itself. So I'm sort of out of ideas. Does this run, at the same scale, on your laptop successfully? Lawrence -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQEcBAEBAgAGBQJVUyWlAAoJECOc1kQ8PEYvdz0H/11HfQy0p7LO1DpGyoXPGtEx 25rhNltEiK/Myv//IjSvgjiApgvCSTNLcgqJUtj86OMiSPmATadT+uVKfEk8wG/G yv2bm11GRQxOX79EV4skfIdba6X2/Oiekb5ktmF0GL8iav3tYUVOHbRLYBmJExT1 YMihip/CFuvdzuoUCbFGGlcni9IJAArmADyJEdVmEUEV258eMVtPYiGFEdi8ajM9 H5X+f5SVRuW77lKg+PhSzgjaRRvJUfLeDE0CECHS0sLpWT5EZF+KjhBq5g6a7rIq 4iE4QE7TMPjGtL8tzqXEPJhqb9NMG+29BI+V+SYcT/aJBky2pOTC65rBm6kXT8g= =wTeg -----END PGP SIGNATURE----- _______________________________________________ firedrake mailing list firedrake@imperial.ac.uk<mailto:firedrake@imperial.ac.uk> https://mailman.ic.ac.uk/mailman/listinfo/firedrake _______________________________________________ firedrake mailing list firedrake@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/firedrake
On 16 May 2015, at 10:37, Eike Mueller <E.Mueller@bath.ac.uk> wrote:
Hi Lawrence,
as an additional test I just tried to re-run PETSc’s ex6 on 24 cores with Euclid. Here it does seem to work, the command I use is:
mpirun -n 24 ./ex6 -f -f helmholtz-sphere.dat -ksp_type cg -ksp_convergence_test skip -ksp_max_it 2 -ksp_monitor -pc_hypre_type boomeramg -pc_type hypre -pc_hypre_boomeramg_smooth_type Euclid -log_summary -ksp_view
As a sanity check, is there a way of writing out the pressure matrix for the system that I currently solve with the fieldsplit preconditioner and run it through ex6 exactly like above?
Yes. full = assemble(mixed_operator) A = A.M[0, 0].handle B = A.M[0, 1].handle C = A.M[1, 0].handle D = A.M[1, 1].handle Adiag = A.getDiagonal() Adiag.reciprocal() Ainv = A.duplicate() Ainv.setDiagonal(Adiag) tmp = Ainv.matMult(B) tmp = C.matMult(tmp) S = D.copy() S.axpy(-1, tmp) from firedrake.petsc import PETSc vwr = PETSc.Viewer() vwr.setType(vwr.Type.BINARY) vwr.setFileName("filename.dat") vwr.setFileMode(vwr.Mode.WRITE) S.view(vwr) Lawrence
Thanks, I guess that is A = full.M[0,0].handle B = full.M[0,1].handle C = full.M[1,0].handle D = full.M[1,1].handle but it still crashes with a segfault in PETSc in vwr.setType(vwr.Type.BINARY) If I comment out the lines #vwr.setType(vwr.Type.BINARY) #vwr.setFileName("filename.dat") #vwr.setFileMode(vwr.Mode.WRITE) it prints to the screen ok Eike
On 16 May 2015, at 11:06, Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk> wrote:
On 16 May 2015, at 10:37, Eike Mueller <E.Mueller@bath.ac.uk> wrote:
Hi Lawrence,
as an additional test I just tried to re-run PETSc’s ex6 on 24 cores with Euclid. Here it does seem to work, the command I use is:
mpirun -n 24 ./ex6 -f -f helmholtz-sphere.dat -ksp_type cg -ksp_convergence_test skip -ksp_max_it 2 -ksp_monitor -pc_hypre_type boomeramg -pc_type hypre -pc_hypre_boomeramg_smooth_type Euclid -log_summary -ksp_view
As a sanity check, is there a way of writing out the pressure matrix for the system that I currently solve with the fieldsplit preconditioner and run it through ex6 exactly like above?
Yes.
full = assemble(mixed_operator)
A = A.M[0, 0].handle B = A.M[0, 1].handle C = A.M[1, 0].handle D = A.M[1, 1].handle
Adiag = A.getDiagonal()
Adiag.reciprocal()
Ainv = A.duplicate() Ainv.setDiagonal(Adiag)
tmp = Ainv.matMult(B) tmp = C.matMult(tmp)
S = D.copy()
S.axpy(-1, tmp)
from firedrake.petsc import PETSc
vwr = PETSc.Viewer()
vwr.setType(vwr.Type.BINARY) vwr.setFileName("filename.dat") vwr.setFileMode(vwr.Mode.WRITE) S.view(vwr)
Lawrence _______________________________________________ firedrake mailing list firedrake@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/firedrake
On 16 May 2015, at 11:39, Eike Mueller <E.Mueller@bath.ac.uk> wrote:
Thanks, I guess that is
A = full.M[0,0].handle B = full.M[0,1].handle C = full.M[1,0].handle D = full.M[1,1].handle
but it still crashes with a segfault in PETSc in
do vwr.setFromOptions() i think
vwr.setType(vwr.Type.BINARY)
If I comment out the lines
#vwr.setType(vwr.Type.BINARY) #vwr.setFileName("filename.dat") #vwr.setFileMode(vwr.Mode.WRITE)
it prints to the screen ok
Eike
On 16 May 2015, at 11:06, Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk> wrote:
On 16 May 2015, at 10:37, Eike Mueller <E.Mueller@bath.ac.uk> wrote:
Hi Lawrence,
as an additional test I just tried to re-run PETSc’s ex6 on 24 cores with Euclid. Here it does seem to work, the command I use is:
mpirun -n 24 ./ex6 -f -f helmholtz-sphere.dat -ksp_type cg -ksp_convergence_test skip -ksp_max_it 2 -ksp_monitor -pc_hypre_type boomeramg -pc_type hypre -pc_hypre_boomeramg_smooth_type Euclid -log_summary -ksp_view
As a sanity check, is there a way of writing out the pressure matrix for the system that I currently solve with the fieldsplit preconditioner and run it through ex6 exactly like above?
Yes.
full = assemble(mixed_operator)
A = A.M[0, 0].handle B = A.M[0, 1].handle C = A.M[1, 0].handle D = A.M[1, 1].handle
Adiag = A.getDiagonal()
Adiag.reciprocal()
Ainv = A.duplicate() Ainv.setDiagonal(Adiag)
tmp = Ainv.matMult(B) tmp = C.matMult(tmp)
S = D.copy()
S.axpy(-1, tmp)
from firedrake.petsc import PETSc
vwr = PETSc.Viewer()
vwr.setType(vwr.Type.BINARY) vwr.setFileName("filename.dat") vwr.setFileMode(vwr.Mode.WRITE) S.view(vwr)
Lawrence _______________________________________________ firedrake mailing list firedrake@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/firedrake
_______________________________________________ firedrake mailing list firedrake@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/firedrake
Hi Lawrence, ah, if I also call vwr.create() it works and generates a .dat file with the matrix. Running this file through ex6 works on 1 core but crashes with a PETSc segfault on 24 cores. Eike
On 16 May 2015, at 11:49, Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk> wrote:
On 16 May 2015, at 11:39, Eike Mueller <E.Mueller@bath.ac.uk> wrote:
Thanks, I guess that is
A = full.M[0,0].handle B = full.M[0,1].handle C = full.M[1,0].handle D = full.M[1,1].handle
but it still crashes with a segfault in PETSc in
do vwr.setFromOptions() i think
vwr.setType(vwr.Type.BINARY)
If I comment out the lines
#vwr.setType(vwr.Type.BINARY) #vwr.setFileName("filename.dat") #vwr.setFileMode(vwr.Mode.WRITE)
it prints to the screen ok
Eike
On 16 May 2015, at 11:06, Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk> wrote:
On 16 May 2015, at 10:37, Eike Mueller <E.Mueller@bath.ac.uk> wrote:
Hi Lawrence,
as an additional test I just tried to re-run PETSc’s ex6 on 24 cores with Euclid. Here it does seem to work, the command I use is:
mpirun -n 24 ./ex6 -f -f helmholtz-sphere.dat -ksp_type cg -ksp_convergence_test skip -ksp_max_it 2 -ksp_monitor -pc_hypre_type boomeramg -pc_type hypre -pc_hypre_boomeramg_smooth_type Euclid -log_summary -ksp_view
As a sanity check, is there a way of writing out the pressure matrix for the system that I currently solve with the fieldsplit preconditioner and run it through ex6 exactly like above?
Yes.
full = assemble(mixed_operator)
A = A.M[0, 0].handle B = A.M[0, 1].handle C = A.M[1, 0].handle D = A.M[1, 1].handle
Adiag = A.getDiagonal()
Adiag.reciprocal()
Ainv = A.duplicate() Ainv.setDiagonal(Adiag)
tmp = Ainv.matMult(B) tmp = C.matMult(tmp)
S = D.copy()
S.axpy(-1, tmp)
from firedrake.petsc import PETSc
vwr = PETSc.Viewer()
vwr.setType(vwr.Type.BINARY) vwr.setFileName("filename.dat") vwr.setFileMode(vwr.Mode.WRITE) S.view(vwr)
Lawrence _______________________________________________ firedrake mailing list firedrake@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/firedrake
_______________________________________________ firedrake mailing list firedrake@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/firedrake
_______________________________________________ firedrake mailing list firedrake@imperial.ac.uk https://mailman.ic.ac.uk/mailman/listinfo/firedrake
On 16 May 2015, at 12:21, Eike Mueller <E.Mueller@bath.ac.uk> wrote:
ah, if I also call vwr.create() it works and generates a .dat file with the matrix.
Running this file through ex6 works on 1 core but crashes with a PETSc segfault on 24 cores.
Petsc, or inside hypre as before? Can you compile petsc --with-debugging=1, then you'll get much more error checking. Lawrence
Hi Lawrence, I just rebuilt PETSc with the debugging=1 option, and indeed It get a more verbose error message, see below. It crashes somewhere in HYPRE_SetupXXX. Still, that only tells me that something is going wrong in the hypre setup AMG routine. Cheers, Eike eikemueller@dhcppar3 $ mpirun -n 24 ./ex6 -f /Users/eikemueller/PostDocBath/EllipticSolvers/Firedrake_workspace/firedrake-helmholtzsolver/source/pressure_operator.dat -ksp_type cg -ksp_convergence_test skip -ksp_max_it 2 -ksp_monitor -pc_hypre_type boomeramg -pc_type hypre -pc_hypre_boomeramg_smooth_type Euclid [21]PETSC ERROR: ------------------------------------------------------------------------ [21]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [21]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [21]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [21]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [21]PETSC ERROR: likely location of problem given in stack below [21]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [21]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [21]PETSC ERROR: INSTEAD the line number of the start of the function [21]PETSC ERROR: is given. [21]PETSC ERROR: [21] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [21]PETSC ERROR: [21] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [21]PETSC ERROR: [21] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [21]PETSC ERROR: [21] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [21]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [21]PETSC ERROR: Signal received [21]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [21]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [21]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [21]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [21]PETSC ERROR: #1 User provided function() line 0 in unknown file -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 21 in communicator MPI_COMM_WORLD with errorcode 59. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de>:99492] 1 more process has sent help message help-mpi-api.txt / mpi-abort [dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de>:99492] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [8]PETSC ERROR: ------------------------------------------------------------------------ [8]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [8]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [8]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [8]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [8]PETSC ERROR: likely location of problem given in stack below [8]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [8]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [8]PETSC ERROR: INSTEAD the line number of the start of the function [8]PETSC ERROR: is given. [8]PETSC ERROR: [8] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [8]PETSC ERROR: [8] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [8]PETSC ERROR: [8] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [8]PETSC ERROR: [8] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [8]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [8]PETSC ERROR: Signal received [8]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [8]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [8]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [8]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [8]PETSC ERROR: #1 User provided function() line 0 in unknown file [9]PETSC ERROR: ------------------------------------------------------------------------ [9]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [9]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [9]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [9]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [9]PETSC ERROR: likely location of problem given in stack below [9]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [9]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [9]PETSC ERROR: INSTEAD the line number of the start of the function [9]PETSC ERROR: is given. [9]PETSC ERROR: [9] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [9]PETSC ERROR: [9] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [9]PETSC ERROR: [9] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [9]PETSC ERROR: [9] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [9]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [9]PETSC ERROR: Signal received [9]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [9]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [9]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [9]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [9]PETSC ERROR: #1 User provided function() line 0 in unknown file [10]PETSC ERROR: ------------------------------------------------------------------------ [10]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [10]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [10]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [10]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [10]PETSC ERROR: likely location of problem given in stack below [10]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [10]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [10]PETSC ERROR: INSTEAD the line number of the start of the function [10]PETSC ERROR: is given. [10]PETSC ERROR: [10] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [10]PETSC ERROR: [10] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [10]PETSC ERROR: [10] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [10]PETSC ERROR: [10] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [10]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [10]PETSC ERROR: Signal received [10]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [10]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [10]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [10]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [10]PETSC ERROR: #1 User provided function() line 0 in unknown file [11]PETSC ERROR: ------------------------------------------------------------------------ [11]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [11]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [11]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [11]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [11]PETSC ERROR: likely location of problem given in stack below [11]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [11]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [11]PETSC ERROR: INSTEAD the line number of the start of the function [11]PETSC ERROR: is given. [11]PETSC ERROR: [11] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [11]PETSC ERROR: [11] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [11]PETSC ERROR: [11] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [11]PETSC ERROR: [11] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [11]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [11]PETSC ERROR: Signal received [11]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [11]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [11]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [11]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [11]PETSC ERROR: #1 User provided function() line 0 in unknown file [12]PETSC ERROR: ------------------------------------------------------------------------ [12]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [12]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [12]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [12]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [12]PETSC ERROR: likely location of problem given in stack below [12]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [12]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [12]PETSC ERROR: INSTEAD the line number of the start of the function [12]PETSC ERROR: is given. [12]PETSC ERROR: [12] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [12]PETSC ERROR: [12] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [12]PETSC ERROR: [12] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [12]PETSC ERROR: [12] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [12]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [12]PETSC ERROR: Signal received [12]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [12]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [12]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [12]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [12]PETSC ERROR: #1 User provided function() line 0 in unknown file [13]PETSC ERROR: ------------------------------------------------------------------------ [13]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [13]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [13]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [13]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [13]PETSC ERROR: likely location of problem given in stack below [13]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [13]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [13]PETSC ERROR: INSTEAD the line number of the start of the function [13]PETSC ERROR: is given. [13]PETSC ERROR: [13] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [13]PETSC ERROR: [13] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [13]PETSC ERROR: [13] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [13]PETSC ERROR: [13] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [13]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [13]PETSC ERROR: Signal received [13]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [13]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [13]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [13]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [13]PETSC ERROR: #1 User provided function() line 0 in unknown file [14]PETSC ERROR: ------------------------------------------------------------------------ [14]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [14]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [14]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [14]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [14]PETSC ERROR: likely location of problem given in stack below [14]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [14]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [14]PETSC ERROR: INSTEAD the line number of the start of the function [14]PETSC ERROR: is given. [14]PETSC ERROR: [14] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [14]PETSC ERROR: [14] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [14]PETSC ERROR: [14] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [14]PETSC ERROR: [14] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [14]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [14]PETSC ERROR: Signal received [14]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [14]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [14]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [14]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [14]PETSC ERROR: #1 User provided function() line 0 in unknown file [15]PETSC ERROR: ------------------------------------------------------------------------ [15]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [15]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [15]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [15]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [15]PETSC ERROR: likely location of problem given in stack below [15]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [15]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [15]PETSC ERROR: INSTEAD the line number of the start of the function [15]PETSC ERROR: is given. [15]PETSC ERROR: [15] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [15]PETSC ERROR: [15] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [15]PETSC ERROR: [15] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [15]PETSC ERROR: [15] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [15]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [15]PETSC ERROR: Signal received [15]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [15]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [15]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [15]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [15]PETSC ERROR: #1 User provided function() line 0 in unknown file [16]PETSC ERROR: ------------------------------------------------------------------------ [16]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [16]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [16]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [16]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [16]PETSC ERROR: likely location of problem given in stack below [16]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [16]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [16]PETSC ERROR: INSTEAD the line number of the start of the function [16]PETSC ERROR: is given. [16]PETSC ERROR: [16] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [16]PETSC ERROR: [16] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [16]PETSC ERROR: [16] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [16]PETSC ERROR: [16] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [16]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [16]PETSC ERROR: Signal received [16]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [16]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [16]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [16]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [16]PETSC ERROR: #1 User provided function() line 0 in unknown file [17]PETSC ERROR: ------------------------------------------------------------------------ [17]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [17]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [17]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [17]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [17]PETSC ERROR: likely location of problem given in stack below [17]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [17]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [17]PETSC ERROR: INSTEAD the line number of the start of the function [17]PETSC ERROR: is given. [17]PETSC ERROR: [17] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [17]PETSC ERROR: [17] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [17]PETSC ERROR: [17] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [17]PETSC ERROR: [17] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [17]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [17]PETSC ERROR: Signal received [17]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [17]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [17]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [17]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [17]PETSC ERROR: #1 User provided function() line 0 in unknown file [18]PETSC ERROR: ------------------------------------------------------------------------ [18]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [18]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [18]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [18]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [18]PETSC ERROR: likely location of problem given in stack below [18]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [18]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [18]PETSC ERROR: INSTEAD the line number of the start of the function [18]PETSC ERROR: is given. [18]PETSC ERROR: [18] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [18]PETSC ERROR: [18] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [18]PETSC ERROR: [18] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [18]PETSC ERROR: [18] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [18]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [18]PETSC ERROR: Signal received [18]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [18]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [18]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [18]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [18]PETSC ERROR: #1 User provided function() line 0 in unknown file [19]PETSC ERROR: ------------------------------------------------------------------------ [19]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [19]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [19]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [19]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [19]PETSC ERROR: likely location of problem given in stack below [19]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [19]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [19]PETSC ERROR: INSTEAD the line number of the start of the function [19]PETSC ERROR: is given. [19]PETSC ERROR: [19] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [19]PETSC ERROR: [19] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [19]PETSC ERROR: [19] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [19]PETSC ERROR: [19] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [19]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [19]PETSC ERROR: Signal received [19]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [19]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [19]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [19]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [19]PETSC ERROR: #1 User provided function() line 0 in unknown file [20]PETSC ERROR: ------------------------------------------------------------------------ [20]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [20]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [20]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [20]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [20]PETSC ERROR: likely location of problem given in stack below [20]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [20]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [20]PETSC ERROR: INSTEAD the line number of the start of the function [20]PETSC ERROR: is given. [20]PETSC ERROR: [20] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [20]PETSC ERROR: [20] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [20]PETSC ERROR: [20] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [20]PETSC ERROR: [20] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [20]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [20]PETSC ERROR: Signal received [20]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [20]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [20]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [20]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [20]PETSC ERROR: #1 User provided function() line 0 in unknown file [22]PETSC ERROR: ------------------------------------------------------------------------ [22]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [22]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [22]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [22]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [22]PETSC ERROR: likely location of problem given in stack below [22]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [22]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [22]PETSC ERROR: INSTEAD the line number of the start of the function [22]PETSC ERROR: is given. [22]PETSC ERROR: [22] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [22]PETSC ERROR: [22] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [22]PETSC ERROR: [22] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [22]PETSC ERROR: [22] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [22]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [22]PETSC ERROR: Signal received [22]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [22]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [22]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [22]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [22]PETSC ERROR: #1 User provided function() line 0 in unknown file [23]PETSC ERROR: ------------------------------------------------------------------------ [23]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [23]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [23]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [23]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [23]PETSC ERROR: likely location of problem given in stack below [23]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [23]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [23]PETSC ERROR: INSTEAD the line number of the start of the function [23]PETSC ERROR: is given. [23]PETSC ERROR: [23] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [23]PETSC ERROR: [23] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [23]PETSC ERROR: [23] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [23]PETSC ERROR: [23] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [23]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [23]PETSC ERROR: Signal received [23]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [23]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [23]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [23]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [23]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [0]PETSC ERROR: [0] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [0]PETSC ERROR: [0] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [0]PETSC ERROR: [0] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [0]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [0]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [1]PETSC ERROR: likely location of problem given in stack below [1]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [1]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [1]PETSC ERROR: INSTEAD the line number of the start of the function [1]PETSC ERROR: is given. [1]PETSC ERROR: [1] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [1]PETSC ERROR: [1] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [1]PETSC ERROR: [1] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [1]PETSC ERROR: [1] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [1]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [1]PETSC ERROR: Signal received [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [1]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [1]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [1]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [1]PETSC ERROR: #1 User provided function() line 0 in unknown file [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [2]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [2]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [2]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [2]PETSC ERROR: likely location of problem given in stack below [2]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [2]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [2]PETSC ERROR: INSTEAD the line number of the start of the function [2]PETSC ERROR: is given. [2]PETSC ERROR: [2] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [2]PETSC ERROR: [2] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [2]PETSC ERROR: [2] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [2]PETSC ERROR: [2] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [2]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [2]PETSC ERROR: Signal received [2]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [2]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [2]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [2]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [2]PETSC ERROR: #1 User provided function() line 0 in unknown file [3]PETSC ERROR: ------------------------------------------------------------------------ [3]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [3]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [3]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [3]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [3]PETSC ERROR: likely location of problem given in stack below [3]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [3]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [3]PETSC ERROR: INSTEAD the line number of the start of the function [3]PETSC ERROR: is given. [3]PETSC ERROR: [3] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [3]PETSC ERROR: [3] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [3]PETSC ERROR: [3] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [3]PETSC ERROR: [3] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [3]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [3]PETSC ERROR: Signal received [3]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [3]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [3]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [3]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [3]PETSC ERROR: #1 User provided function() line 0 in unknown file [4]PETSC ERROR: ------------------------------------------------------------------------ [4]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [4]PETSC ERROR: likely location of problem given in stack below [4]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [4]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [4]PETSC ERROR: INSTEAD the line number of the start of the function [4]PETSC ERROR: is given. [4]PETSC ERROR: [4] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [4]PETSC ERROR: [4] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [4]PETSC ERROR: [4] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [4]PETSC ERROR: [4] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Signal received [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [4]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [4]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [4]PETSC ERROR: #1 User provided function() line 0 in unknown file [5]PETSC ERROR: ------------------------------------------------------------------------ [5]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [5]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [5]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [5]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [5]PETSC ERROR: likely location of problem given in stack below [5]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [5]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [5]PETSC ERROR: INSTEAD the line number of the start of the function [5]PETSC ERROR: is given. [5]PETSC ERROR: [5] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [5]PETSC ERROR: [5] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [5]PETSC ERROR: [5] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [5]PETSC ERROR: [5] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [5]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [5]PETSC ERROR: Signal received [5]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [5]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [5]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [5]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [5]PETSC ERROR: #1 User provided function() line 0 in unknown file [6]PETSC ERROR: ------------------------------------------------------------------------ [6]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [6]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [6]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [6]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [6]PETSC ERROR: likely location of problem given in stack below [6]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [6]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [6]PETSC ERROR: INSTEAD the line number of the start of the function [6]PETSC ERROR: is given. [6]PETSC ERROR: [6] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [6]PETSC ERROR: [6] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [6]PETSC ERROR: [6] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [6]PETSC ERROR: [6] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [6]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [6]PETSC ERROR: Signal received [6]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [6]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [6]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [6]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [6]PETSC ERROR: #1 User provided function() line 0 in unknown file [7]PETSC ERROR: ------------------------------------------------------------------------ [7]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [7]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [7]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [7]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [7]PETSC ERROR: likely location of problem given in stack below [7]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [7]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [7]PETSC ERROR: INSTEAD the line number of the start of the function [7]PETSC ERROR: is given. [7]PETSC ERROR: [7] HYPRE_SetupXXX line 179 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [7]PETSC ERROR: [7] PCSetUp_HYPRE line 127 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/impls/hypre/hypre.c [7]PETSC ERROR: [7] PCSetUp line 882 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/pc/interface/precon.c [7]PETSC ERROR: [7] KSPSetUp line 245 /Users/eikemueller/PostDocBath/EllipticSolvers/petsc/src/ksp/ksp/interface/itfunc.c [7]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [7]PETSC ERROR: Signal received [7]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [7]PETSC ERROR: Petsc Development GIT revision: v3.5.2-3015-g1810e44 GIT Date: 2015-05-08 20:42:37 +0100 [7]PETSC ERROR: ./ex6 on a arch-darwin-c-debug named dhcppar3.iwr.uni-heidelberg.de<http://dhcppar3.iwr.uni-heidelberg.de> by eikemueller Tue May 19 15:06:46 2015 [7]PETSC ERROR: Configure options --download-chaco --download-hypre --download-triangle --with-debugging=1 PETSC_ARCH=arch-darwin-c-debug [7]PETSC ERROR: #1 User provided function() line 0 in unknown file -- Dr Eike Hermann Mueller Lecturer in Scientific Computing Department of Mathematical Sciences University of Bath Bath BA2 7AY, United Kingdom +44 1225 38 6241 e.mueller@bath.ac.uk<mailto:e.mueller@bath.ac.uk> http://people.bath.ac.uk/em459/ On 16 May 2015, at 13:25, Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk<mailto:lawrence.mitchell@imperial.ac.uk>> wrote: On 16 May 2015, at 12:21, Eike Mueller <E.Mueller@bath.ac.uk<mailto:E.Mueller@bath.ac.uk>> wrote: ah, if I also call vwr.create() it works and generates a .dat file with the matrix. Running this file through ex6 works on 1 core but crashes with a PETSc segfault on 24 cores. Petsc, or inside hypre as before? Can you compile petsc --with-debugging=1, then you'll get much more error checking. Lawrence _______________________________________________ firedrake mailing list firedrake@imperial.ac.uk<mailto:firedrake@imperial.ac.uk> https://mailman.ic.ac.uk/mailman/listinfo/firedrake
-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On 19/05/15 14:28, Eike Mueller wrote:
Hi Lawrence,
I just rebuilt PETSc with the debugging=1 option, and indeed It get a more verbose error message, see below. It crashes somewhere in HYPRE_SetupXXX.
Still, that only tells me that something is going wrong in the hypre setup AMG routine.
Yep, so I'm not sure what the problem is, I wonder if it's worthwhile reporting to the hypre team.
Cheers,
Eike
eikemueller@dhcppar3 $ mpirun -n 24 ./ex6 -f /Users/eikemueller/PostDocBath/EllipticSolvers/Firedrake_workspace/firedrake-helmholtzsolver/source/pressure_operator.dat
- -ksp_type cg -ksp_convergence_test skip -ksp_max_it 2 -ksp_monitor
-pc_hypre_type boomeramg -pc_type hypre -pc_hypre_boomeramg_smooth_type Euclid [21]PETSC ERROR: ------------------------------------------------------------------------
[21]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range [21]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [21]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [21]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [21]PETSC ERROR: likely location of problem given in stack below [21]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [21]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [21]PETSC ERROR: INSTEAD the line number of the start of the function [21]PETSC ERROR: is given. [21]PETSC ERROR: [21] HYPRE_SetupXXX line
So this is calling HYPRE_BoomerAMGSetup, which is a hypre call. So I'm again not sure what's going wrong, but something inside hypre again I guess. Lawrence -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQEcBAEBAgAGBQJVWzsoAAoJECOc1kQ8PEYv/DQH/iiys8rClF52h1LnjD4gEKae XOARXGCA9w9K0BaKvOVqceWxGavOq3QZEHlfVhG9mfUcKV/BQB0cDtvk8rQiZ9d6 uWVQp8k7CJecGK9+FQh+m5Bt2nV9/ij1uSo87tpl1WesZSlQEt5GHXIzfc4RVJsF DTlZ0B7H53X4T7DTjcq5nAYRpht8fbb01QSBmlKTtTisyLcGhv/12yEEmiT3iPk+ qdKKZaWYOVQN+E/rcrF97I56ONXFoj/XRs0g8DlM1u4iaK8RNx34X9cOSfEAu93j afkPdaQ3tPMgyTG+TIbdylbjpIkxeyjkMLQjsWvsbIK/2/fkpBZqSiu1PRSp2cc= =Ibvj -----END PGP SIGNATURE-----
Hi Lawrence, thanks, I had already sent them an email last week, and just tried to follow up on it again. I’m using 2 refinement levels, so there should be enough cells, besides I guess when I write the matrix out and then read it from petsc it will repartition anyway. Thanks, Eike
On 19 May 2015, at 15:31, Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk> wrote:
-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1
On 19/05/15 14:28, Eike Mueller wrote:
Hi Lawrence,
I just rebuilt PETSc with the debugging=1 option, and indeed It get a more verbose error message, see below. It crashes somewhere in HYPRE_SetupXXX.
Still, that only tells me that something is going wrong in the hypre setup AMG routine.
Yep, so I'm not sure what the problem is, I wonder if it's worthwhile reporting to the hypre team.
Cheers,
Eike
eikemueller@dhcppar3 $ mpirun -n 24 ./ex6 -f /Users/eikemueller/PostDocBath/EllipticSolvers/Firedrake_workspace/firedrake-helmholtzsolver/source/pressure_operator.dat
- -ksp_type cg -ksp_convergence_test skip -ksp_max_it 2 -ksp_monitor
-pc_hypre_type boomeramg -pc_type hypre -pc_hypre_boomeramg_smooth_type Euclid [21]PETSC ERROR: ------------------------------------------------------------------------
[21]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range [21]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [21]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [21]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [21]PETSC ERROR: likely location of problem given in stack below [21]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [21]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [21]PETSC ERROR: INSTEAD the line number of the start of the function [21]PETSC ERROR: is given. [21]PETSC ERROR: [21] HYPRE_SetupXXX line
So this is calling HYPRE_BoomerAMGSetup, which is a hypre call. So I'm again not sure what's going wrong, but something inside hypre again I guess.
Lawrence -----BEGIN PGP SIGNATURE----- Version: GnuPG v1
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Hi Lawrence, I never heard back from the hypre developers, but I now use Block Jacobi + ILU instead of PILUT in the Euclid smoother for BoomerAMG, and then it works in parallel. As far as I can tell the number of iterations is the same (comparing PILUT and Block Jacobi+ILU on 1 processor). I had tried that change before, but due to a stupid bug that I created in my changes to the PETSc hypre interface that option did not get set properly (I called the wrong hypre method). I pushed a change to my PETSc branch (but I haven’t managed to create a pull-request to get those changes into the PETSc repository). I’ve now tested it on ARCHER as well. The bottom line is still that the geometric MG and BoomerAMG times are very similar both at lowest- and at higher-order. That’s an improvement compared to the numbers I showed in Edinburgh. Cheers, Eike
On 20 May 2015, at 17:21, Eike Mueller <E.Mueller@bath.ac.uk> wrote:
Hi Lawrence,
thanks, I had already sent them an email last week, and just tried to follow up on it again. I’m using 2 refinement levels, so there should be enough cells, besides I guess when I write the matrix out and then read it from petsc it will repartition anyway.
Thanks,
Eike
On 19 May 2015, at 15:31, Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk> wrote:
-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1
On 19/05/15 14:28, Eike Mueller wrote:
Hi Lawrence,
I just rebuilt PETSc with the debugging=1 option, and indeed It get a more verbose error message, see below. It crashes somewhere in HYPRE_SetupXXX.
Still, that only tells me that something is going wrong in the hypre setup AMG routine.
Yep, so I'm not sure what the problem is, I wonder if it's worthwhile reporting to the hypre team.
Cheers,
Eike
eikemueller@dhcppar3 $ mpirun -n 24 ./ex6 -f /Users/eikemueller/PostDocBath/EllipticSolvers/Firedrake_workspace/firedrake-helmholtzsolver/source/pressure_operator.dat
- -ksp_type cg -ksp_convergence_test skip -ksp_max_it 2 -ksp_monitor
-pc_hypre_type boomeramg -pc_type hypre -pc_hypre_boomeramg_smooth_type Euclid [21]PETSC ERROR: ------------------------------------------------------------------------
[21]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range [21]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [21]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [21]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [21]PETSC ERROR: likely location of problem given in stack below [21]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [21]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [21]PETSC ERROR: INSTEAD the line number of the start of the function [21]PETSC ERROR: is given. [21]PETSC ERROR: [21] HYPRE_SetupXXX line
So this is calling HYPRE_BoomerAMGSetup, which is a hypre call. So I'm again not sure what's going wrong, but something inside hypre again I guess.
Lawrence -----BEGIN PGP SIGNATURE----- Version: GnuPG v1
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participants (2)
-
Eike Mueller
-
Lawrence Mitchell