Running firedrake-install
Checking for presence of package build-essential...
installed.
Checking for presence of package autoconf...
installed.
Checking for presence of package automake...
installed.
Checking for presence of package cmake...
installed.
Checking for presence of package gfortran...
installed.
Checking for presence of package git-core...
missing.
Checking for presence of package libblas-dev...
installed.
Checking for presence of package liblapack-dev...
installed.
Checking for presence of package libopenmpi-dev...
installed.
Checking for presence of package libtool...
installed.
Checking for presence of package mercurial...
installed.
Checking for presence of package openmpi-bin...
installed.
Checking for presence of package python3-dev...
installed.
Checking for presence of package python3-pip...
installed.
Checking for presence of package python3-tk...
installed.
Checking for presence of package python3-venv...
installed.
Checking for presence of package zlib1g-dev...
installed.
Installing missing packages: git-core.
[sudo] password for amireh:
Reading package lists... Done
Building dependency tree
Reading state information... Done
Note, selecting 'git' instead of 'git-core'
git is already the newest version (1:2.17.0-1ubuntu1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Creating firedrake venv in '/home/amireh/firedrake'.
Cloning firedrake
Failed to clone firedrake using ssh, falling back to https.
Successfully cloned repository firedrake.
Checking out branch master
Successfully checked out branch master
Cloning the dependencies of firedrake
Cloning ufl
Failed to clone ufl using ssh, falling back to https.
Successfully cloned repository ufl.
Checking out branch master
Successfully checked out branch master
Cloning fiat
Failed to clone fiat using ssh, falling back to https.
Successfully cloned repository fiat.
Checking out branch master
Successfully checked out branch master
Cloning FInAT
Failed to clone FInAT using ssh, falling back to https.
Successfully cloned repository FInAT.
Checking out branch master
Successfully checked out branch master
Cloning tsfc
Failed to clone tsfc using ssh, falling back to https.
Successfully cloned repository tsfc.
Checking out branch master
Successfully checked out branch master
Cloning PyOP2
Failed to clone PyOP2 using ssh, falling back to https.
Successfully cloned repository PyOP2.
Checking out branch master
Successfully checked out branch master
Cloning the dependencies of PyOP2
Cloning petsc
Failed to clone petsc using ssh, falling back to https.
Successfully cloned repository petsc.
Checking out branch firedrake
Successfully checked out branch firedrake
Cloning petsc4py
Failed to clone petsc4py using ssh, falling back to https.
Successfully cloned repository petsc4py.
Checking out branch firedrake
Successfully checked out branch firedrake
Cloning COFFEE
Failed to clone COFFEE using ssh, falling back to https.
Successfully cloned repository COFFEE.
Checking out branch master
Successfully checked out branch master
Installing petsc/
Downloading Eigen from 'https://bitbucket.org/eigen/eigen/get/3.3.3.tar.gz' to 'eigen-3.3.3.tgz'
Checking Eigen tarball integrity
Eigen tarball hash valid
Building PETSc.
Depending on your platform, may take between a few minutes and an hour or more to build!
Traceback (most recent call last):
File "firedrake-install", line 1074, in <module>
install("petsc/")
File "firedrake-install", line 554, in install
build_and_install_petsc()
File "firedrake-install", line 660, in build_and_install_petsc
run_pip_install(["--ignore-installed", "petsc/"])
File "firedrake-install", line 529, in run_pip_install
check_call(pipinstall + pipargs)
File "firedrake-install", line 366, in check_call
log.debug(subprocess.check_output(arguments, stderr=subprocess.STDOUT, env=env).decode())
File "/usr/lib/python3.6/subprocess.py", line 336, in check_output
**kwargs).stdout
File "/usr/lib/python3.6/subprocess.py", line 418, in run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['/home/amireh/firedrake/bin/python', '-m', 'pip', 'install', '--no-binary', 'mpi4py', '--no-deps', '-vvv', '--ignore-installed', 'petsc/']' returned non-zero exit status 1.
Install log saved in firedrake-install.log
Please guide me to install.
Best regards,
Amireh