Not sure if this is related, but I had to update my petsc4py to get this branch to work. But now I am getting this error, even in PyOP2

Traceback (most recent call last):
  File "/usr/local/bin/py.test", line 11, in <module>
    sys.exit(main())
  File "/usr/lib/python2.7/dist-packages/_pytest/config.py", line 18, in main
    config = _prepareconfig(args, plugins)
  File "/usr/lib/python2.7/dist-packages/_pytest/config.py", line 62, in _prepareconfig
    pluginmanager=pluginmanager, args=args)
  File "/usr/lib/python2.7/dist-packages/_pytest/core.py", line 376, in __call__
    return self._docall(methods, kwargs)
  File "/usr/lib/python2.7/dist-packages/_pytest/core.py", line 387, in _docall
    res = mc.execute()
  File "/usr/lib/python2.7/dist-packages/_pytest/core.py", line 288, in execute
    res = method(**kwargs)
  File "/usr/lib/python2.7/dist-packages/_pytest/helpconfig.py", line 25, in pytest_cmdline_parse
    config = __multicall__.execute()
  File "/usr/lib/python2.7/dist-packages/_pytest/core.py", line 288, in execute
    res = method(**kwargs)
  File "/usr/lib/python2.7/dist-packages/_pytest/config.py", line 617, in pytest_cmdline_parse
    self.parse(args)
  File "/usr/lib/python2.7/dist-packages/_pytest/config.py", line 710, in parse
    self._preparse(args)
  File "/usr/lib/python2.7/dist-packages/_pytest/config.py", line 690, in _preparse
    args=args, parser=self._parser)
  File "/usr/lib/python2.7/dist-packages/_pytest/core.py", line 376, in __call__
    return self._docall(methods, kwargs)
  File "/usr/lib/python2.7/dist-packages/_pytest/core.py", line 387, in _docall
    res = mc.execute()
  File "/usr/lib/python2.7/dist-packages/_pytest/core.py", line 288, in execute
    res = method(**kwargs)
  File "/usr/lib/python2.7/dist-packages/_pytest/capture.py", line 42, in pytest_load_initial_conftests
    return __multicall__.execute()
  File "/usr/lib/python2.7/dist-packages/_pytest/core.py", line 288, in execute
    res = method(**kwargs)
  File "/usr/lib/python2.7/dist-packages/_pytest/config.py", line 673, in pytest_load_initial_conftests
    self._conftest.setinitial(args)
  File "/usr/lib/python2.7/dist-packages/_pytest/config.py", line 486, in setinitial
    self._try_load_conftest(anchor)
  File "/usr/lib/python2.7/dist-packages/_pytest/config.py", line 492, in _try_load_conftest
    self._path2confmods[None] = self.getconftestmodules(anchor)
  File "/usr/lib/python2.7/dist-packages/_pytest/config.py", line 511, in getconftestmodules
    clist.append(self.importconftest(conftestpath))
  File "/usr/lib/python2.7/dist-packages/_pytest/config.py", line 537, in importconftest
    self._conftestpath2mod[conftestpath] = mod = conftestpath.pyimport()
  File "/usr/lib/python2.7/dist-packages/py/_path/local.py", line 620, in pyimport
    __import__(modname)
  File "/home/justin/Software/firedrake-deps/PyOP2/test/conftest.py", line 40, in <module>
    from pyop2 import op2
  File "/home/justin/Software/firedrake-deps/PyOP2/pyop2/__init__.py", line 9, in <module>
    from op2 import *
  File "/home/justin/Software/firedrake-deps/PyOP2/pyop2/op2.py", line 39, in <module>
    import base
  File "/home/justin/Software/firedrake-deps/PyOP2/pyop2/base.py", line 56, in <module>
    from sparsity import build_sparsity
  File "PETSc.pxd", line 70, in init pyop2.sparsity (pyop2/sparsity.cpp:22252)
  File "/usr/local/lib/python2.7/dist-packages/petsc4py/PETSc.py", line 3, in <module>
    PETSc = ImportPETSc(ARCH)
  File "/usr/local/lib/python2.7/dist-packages/petsc4py/lib/__init__.py", line 29, in ImportPETSc
    return Import('petsc4py', 'PETSc', path, arch)
  File "/usr/local/lib/python2.7/dist-packages/petsc4py/lib/__init__.py", line 64, in Import
    module = imp.load_module(fullname, fo, fn, stuff)
ImportError: /usr/local/lib/python2.7/dist-packages/petsc4py/lib/arch-linux2-c-opt/PETSc.so: undefined symbol: DMShellSetCreateSubDM
make: *** [unit_sequential] Error 1

Is this more a petsc4py error? As in should it be reported to the petsc-users list?

Thanks,

Justin

On Fri, Jul 24, 2015 at 7:36 AM, Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk> wrote:

> On 24 Jul 2015, at 12:50, Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk> wrote:
...
> Oh, I think I failed to correctly implement this case.  I'll try and put something together.

I think the firedrake branch indexed-fixes does this correctly.

To ensure one way we don't regress later, if this works for you can you provide some small test code (similar to the ones you've been sending) and we'll incorporate it into the test suite.

Cheers,

Lawrence

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