Re: [firedrake] upgrading firedrake (problem found!)

5 Feb 2016

      Thanks Lawrence.  Here goes...

** Test 1 **

FrancisulinsMBP:software fpoulin$ /Users/fpoulin/software/firedrake/bin/python -c "import sys; print sys.executable; print sys.path"
/Users/fpoulin/software/firedrake/bin/python
['', 
'/Users/fpoulin/software/firedrake/lib/python2.7/site-packages/h5py-2.5.0-py2.7-macosx-10.10-x86_64.egg', '/Users/fpoulin/software/pyro2', 
'/Users/fpoulin/software/SPINSpy', 
'/Users/fpoulin/software', 
'/Users/fpoulin/software/firedrake/lib/python27.zip', 
'/Users/fpoulin/software/firedrake/lib/python2.7', 
'/Users/fpoulin/software/firedrake/lib/python2.7/plat-darwin', 
'/Users/fpoulin/software/firedrake/lib/python2.7/plat-mac', 
'/Users/fpoulin/software/firedrake/lib/python2.7/plat-mac/lib-scriptpackages', '/Users/fpoulin/software/firedrake/lib/python2.7/lib-tk', 
'/Users/fpoulin/software/firedrake/lib/python2.7/lib-old', 
'/Users/fpoulin/software/firedrake/lib/python2.7/lib-dynload', '/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7', '/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-darwin', '/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-tk', '/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-mac', '/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-mac/lib-scriptpackages', '/Users/fpoulin/software/firedrake/lib/python2.7/site-packages']
FrancisulinsMBP:software fpoulin$ clear

FrancisulinsMBP:software fpoulin$ /Users/fpoulin/software/firedrake/bin/python -c "import sys; print sys.executable; print sys.path"
/Users/fpoulin/software/firedrake/bin/python
['', '/Users/fpoulin/software/firedrake/lib/python2.7/site-packages/h5py-2.5.0-py2.7-macosx-10.10-x86_64.egg', '/Users/fpoulin/software/pyro2', 
'/Users/fpoulin/software/SPINSpy', 
'/Users/fpoulin/software', 
'/Users/fpoulin/software/firedrake/lib/python27.zip', 
'/Users/fpoulin/software/firedrake/lib/python2.7', 
'/Users/fpoulin/software/firedrake/lib/python2.7/plat-darwin', 
'/Users/fpoulin/software/firedrake/lib/python2.7/plat-mac', 
'/Users/fpoulin/software/firedrake/lib/python2.7/plat-mac/lib-scriptpackages', '/Users/fpoulin/software/firedrake/lib/python2.7/lib-tk', 
'/Users/fpoulin/software/firedrake/lib/python2.7/lib-old', 
'/Users/fpoulin/software/firedrake/lib/python2.7/lib-dynload', '/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7', '/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-darwin', '/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-tk', '/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-mac', '/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-mac/lib-scriptpackages', '/Users/fpoulin/software/firedrake/lib/python2.7/site-packages']

** Test 2 **

FrancisulinsMBP:software fpoulin$ python -c "import sys; print sys.version"
2.7.11 (default, Jan 22 2016, 08:28:37) 
[GCC 4.2.1 Compatible Apple LLVM 7.0.2 (clang-700.1.81)]

FrancisulinsMBP:software fpoulin$ source firedrake/bin/activate
(firedrake)FrancisulinsMBP:software fpoulin$ python -c "import sys; print sys.version"
2.7.11 (default, Jan 22 2016, 08:28:37) 
[GCC 4.2.1 Compatible Apple LLVM 7.0.2 (clang-700.1.81)]

** Test 3 **

FrancisulinsMBP:software fpoulin$ env
TERM_PROGRAM=Apple_Terminal
MATLABPATH=/Users/fpoulin/Research/claw/matlab
SHELL=/bin/bash
TERM=xterm-256color
TMPDIR=/var/folders/nl/wfwj3nps2wx8m6jx9bh_gslc0000gn/T/
Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.JC9FzxGCzb/Render
TERM_PROGRAM_VERSION=343.7
cxx=/usr/local/bin/c++-4.9
OLDPWD=/Users/fpoulin
TERM_SESSION_ID=472C6396-7536-49E1-BFF5-D36BDAA77C76
PYRO_HOME=/Users/fpoulin/software/pyro2
gcc=/usr/local/bin/gcc-4.9
USER=fpoulin
SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.3FmaQgwRmL/Listeners
__CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0
mpirun=/usr/local/bin/mpirun
PATH=/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/texbin:/usr/X11R6/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/TeX/texbin
gxx=/usr/local/bin/g++-4.9
PWD=/Users/fpoulin/software
NCARG_ROOT=/usr/local
LANG=en_CA.UTF-8
XPC_FLAGS=0x0
XPC_SERVICE_NAME=0
SHLVL=1
HOME=/Users/fpoulin
mpifort=/usr/local/bin/mpifort
mpig90=/usr/local/bin/mpif90
PYTHONPATH=/Users/fpoulin/software/pyro2:/Users/fpoulin/software/SPINSpy::
LOGNAME=fpoulin
DISPLAY=/private/tmp/com.apple.launchd.sp7NtBmLwn/org.macosforge.xquartz:0
cpp=/usr/local/bin/cpp-4.9
mpig77=/usr/local/bin/mpif77
mpicxx=/usr/local/bin/mpic++
_=/usr/bin/env

FrancisulinsMBP:software fpoulin$ source firedrake/bin/activate
(firedrake)FrancisulinsMBP:software fpoulin$ env
TERM_PROGRAM=Apple_Terminal
MATLABPATH=/Users/fpoulin/Research/claw/matlab
SHELL=/bin/bash
TERM=xterm-256color
TMPDIR=/var/folders/nl/wfwj3nps2wx8m6jx9bh_gslc0000gn/T/
Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.JC9FzxGCzb/Render
TERM_PROGRAM_VERSION=343.7
cxx=/usr/local/bin/c++-4.9
OLDPWD=/Users/fpoulin
TERM_SESSION_ID=472C6396-7536-49E1-BFF5-D36BDAA77C76
PYRO_HOME=/Users/fpoulin/software/pyro2
gcc=/usr/local/bin/gcc-4.9
USER=fpoulin
SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.3FmaQgwRmL/Listeners
__CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0
VIRTUAL_ENV=/Users/fpoulin/software/firedrake
mpirun=/usr/local/bin/mpirun
PATH=/Users/fpoulin/software/firedrake/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/texbin:/usr/X11R6/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/TeX/texbin
gxx=/usr/local/bin/g++-4.9
PWD=/Users/fpoulin/software
NCARG_ROOT=/usr/local
LANG=en_CA.UTF-8
XPC_FLAGS=0x0
PS1=(firedrake)\h:\W \u\$ 
XPC_SERVICE_NAME=0
SHLVL=1
HOME=/Users/fpoulin
mpifort=/usr/local/bin/mpifort
mpig90=/usr/local/bin/mpif90
PYTHONPATH=/Users/fpoulin/software/pyro2:/Users/fpoulin/software/SPINSpy::
LOGNAME=fpoulin
DISPLAY=/private/tmp/com.apple.launchd.sp7NtBmLwn/org.macosforge.xquartz:0
cpp=/usr/local/bin/cpp-4.9
mpig77=/usr/local/bin/mpif77
mpicxx=/usr/local/bin/mpic++
_=/usr/bin/env
(firedrake)FrancisulinsMBP:software fpoulin$ 

** Test 4 **

Below you'll see that when I type the path of python, as you suggested, an example works. Even though this is what I think is aliased, it seems to be using the wrong version.

(firedrake)FrancisulinsMBP:software fpoulin$ /Users/fpoulin/software/firedrake/bin/python firedrake/src/firedrake/tests/test_0init.py 
============================================================= test session starts ==============================================================
platform darwin -- Python 2.7.11, pytest-2.8.7, py-1.4.31, pluggy-0.3.1
rootdir: /Users/fpoulin/software/firedrake/src/firedrake, inifile: 
collected 2 items 

firedrake/src/firedrake/tests/test_0init.py ..

=========================================================== 2 passed in 0.03 seconds ===========================================================
(firedrake)FrancisulinsMBP:software fpoulin$ python firedrake/src/firedrake/tests/test_0init.py 
Traceback (most recent call last):
  File "firedrake/src/firedrake/tests/test_0init.py", line 3, in <module>
    from firedrake import *
ImportError: No module named firedrake

Re: [firedrake] upgrading firedrake (problem found!)

Francis Poulin