On Fri, Nov 2, 2018 at 1:27 PM Matthew Knepley <knepley@gmail.com> wrote:
On Fri, Nov 2, 2018 at 1:20 PM Lawrence Mitchell <wence@gmx.li> wrote:
> On 2 Nov 2018, at 17:16, Matthew Knepley <knepley@gmail.com> wrote:
>
> I went on to
>
>   cd src/h5py
>   pip install .
>
> and it that worked
>
> (firedrake) :/PETSc3/fem/firedrake$ pushd src/h5py/
> /PETSc3/fem/firedrake/src/h5py /PETSc3/fem/firedrake /PETSc3/fem
> (firedrake) firedrake:/PETSc3/fem/firedrake/src/h5py$ pip install .
> Processing /PETSc3/fem/firedrake/src/h5py
> Requirement already satisfied: numpy>=1.7 in /PETSc3/fem/firedrake/lib/python3.6/site-packages (from h5py==2.8.0.post0) (1.15.3)
> Requirement already satisfied: six in /PETSc3/fem/firedrake/lib/python3.6/site-packages (from h5py==2.8.0.post0) (1.11.0)
> Installing collected packages: h5py
>   Found existing installation: h5py 2.8.0
>     Uninstalling h5py-2.8.0:
>       Successfully uninstalled h5py-2.8.0
>   Running setup.py install for h5py ... done
> Successfully installed h5py-2.8.0.post0


Great!

> How do I restart the whole Firedrake now?

This is unsupported, but I think it should work:

$ cp firedrake-install firedrake/bin/firedrake-update
$ chmod u+x firedrake/bin/firedrake-update
$ . firedrake/bin/activate
$ rm -rf firedrake/src/libspatialindex
$ firedrake-update

I get

(firedrake) :/PETSc3/fem$ cp firedrake-install firedrake/bin/firedrake-update

(firedrake) :/PETSc3/fem$ chmod u+x firedrake/bin/firedrake-update

(firedrake) :/PETSc3/fem$ rm -rf firedrake/src/libspatialindex

(firedrake) :/PETSc3/fem$ firedrake-update

Running /PETSc3/fem/firedrake/bin/firedrake-update

Traceback (most recent call last):

  File "/PETSc3/fem/firedrake/bin/firedrake-update", line 277, in <module>

    import firedrake_configuration

ModuleNotFoundError: No module named 'firedrake_configuration'


Also note that I have this module

(firedrake)  1:/PETSc3/fem/firedrake$ ls src/firedrake/firedrake_configuration/

__init__.py

 
but it has no configuration.json in it, so I think it would still fail if the import succeeds.

  Thanks,

     Matt

Thanks,

   Matt

Cheers,

Lawrence



--
What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
-- Norbert Wiener



--
What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
-- Norbert Wiener