On 26 Nov 2021, at 14:45, Sagiyama, Koki <k.sagiyama@imperial.ac.uk> wrote:

Hi Oliver,

I'm not sure. Could you also post "/Users/os3918/Documents/firedrake/src/petsc/configure.log"?

Thanks,

Koki

---

From: Street, Oliver <o.street18@imperial.ac.uk>
Sent: Friday, November 26, 2021 11:50 AM
To: Sagiyama, Koki <k.sagiyama@imperial.ac.uk>; firedrake <firedrake@imperial.ac.uk>
Subject: Re: Installation issue

 

Hi Koki,

Thanks for your reply and your suggestion. I implemented those steps and it’s given me another error seemingly related to C compilers - it’s also given me an update log. Any ideas?

Best,

Oliver

Depending on your platform, PETSc may take an hour or more to build!

Traceback (most recent call last):

  File "/Users/os3918/Documents/firedrake/src/../bin/firedrake-update", line 1766, in <module>

    install("petsc/")

  File "/Users/os3918/Documents/firedrake/src/../bin/firedrake-update", line 882, in install

    build_and_install_petsc()

  File "/Users/os3918/Documents/firedrake/src/../bin/firedrake-update", line 1017, in build_and_install_petsc

    check_call([python, "./configure", "PETSC_DIR={}".format(petsc_dir), "PETSC_ARCH={}".format(petsc_arch)] + petsc_options)

  File "/Users/os3918/Documents/firedrake/src/../bin/firedrake-update", line 539, in check_call

    log.debug(subprocess.check_output(arguments, stderr=subprocess.STDOUT, env=os.environ).decode())

  File "/usr/local/Cellar/python@3.9/3.9.9/Frameworks/Python.framework/Versions/3.9/lib/python3.9/subprocess.py", line 424, in check_output

    return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,

  File "/usr/local/Cellar/python@3.9/3.9.9/Frameworks/Python.framework/Versions/3.9/lib/python3.9/subprocess.py", line 528, in run

    raise CalledProcessError(retcode, process.args,

subprocess.CalledProcessError: Command '['/Users/os3918/Documents/firedrake/bin/python', './configure', 'PETSC_DIR=/Users/os3918/Documents/firedrake/src/petsc', 'PETSC_ARCH=default', '--download-hwloc', '--download-superlu_dist', '--download-hdf5', '--download-mpich', '--download-mpich-configure-arguments=--disable-opencl', '--with-fortran-bindings=0', '--with-x=0', '--download-chaco', '--download-pastix', '--with-cxx-dialect=C++11', '--CFLAGS=-I/usr/local/opt/openblas/include -Wno-implicit-function-declaration', '--with-zlib', '--download-metis', '--download-eigen=/Users/os3918/Documents/firedrake/src/eigen-3.3.3.tgz ', '--LDFLAGS=-Wl,-rpath,/usr/local/opt/openblas/lib -L/usr/local/opt/openblas/lib -L/usr/local/opt/gcc/lib/gcc/8', '--download-hypre', '--with-debugging=0', '--download-hwloc-configure-arguments=--disable-opencl', '--download-netcdf', '--download-scalapack', '--with-c2html=0', '--download-ptscotch', '--with-shared-libraries=1', '--download-mumps', '--download-pnetcdf', '--download-suitesparse', '--with-blaslapack-dir=/usr/local/opt/openblas', '--download-ml']' returned non-zero exit status 1.

Update log saved in /Users/os3918/Documents/firedrake/firedrake-update.log

On 26 Nov 2021, at 00:29, Sagiyama, Koki <k.sagiyama@imperial.ac.uk> wrote:

Hi Oliver,

It seems that your eigen is at "/Users/os3918/Documents/eigen-3.3.3.tgz", but Firedrake still tells PETSc that eigen is at "/Users/os3918/Documents/firedrake/src/eigen-3.3.3.tgz"; this path is hard-coded here https://github.com/firedrakeproject/firedrake/blob/master/scripts/firedrake-install#L567.

I think the easiest solution is, using your failed installation, to move eigen-3.3.3.tgz to "/Users/os3918/Documents/firedrake/src", activate firedrake venv, and run `firedrake-update --rebuild` (using unmodified install script).

Thanks,

Koki

---

  

From: firedrake-bounces@imperial.ac.uk <firedrake-bounces@imperial.ac.uk> on behalf of Ollie Street <olliestreet@outlook.com>
Sent: Thursday, November 25, 2021 11:13 AM
To: firedrake <firedrake@imperial.ac.uk>
Subject: [firedrake] Installation issue

 

Hi,

I’m still attempting to get a stable version of firedrake installed on my MacBook, I have encountered an issue with PETSc. It first hit an issue with the file 'eigen-3.3.3.tgz’, so I downloaded this separately and modified the installation file to point it towards this. The installation seemingly got over this issue, but returned the following error on the command line. I’ve also attached the install log. Any help would be much appreciated!

Best,

Oliver

Depending on your platform, PETSc may take an hour or more to build!

Traceback (most recent call last):

  File "/Users/os3918/Documents/firedrake-install", line 1650, in <module>

    install("petsc/")

  File "/Users/os3918/Documents/firedrake-install", line 882, in install

    build_and_install_petsc()

  File "/Users/os3918/Documents/firedrake-install", line 1019, in build_and_install_petsc

    check_call(["make", "PETSC_DIR={}".format(petsc_dir), "PETSC_ARCH={}".format(petsc_arch), "all"])

  File "/Users/os3918/Documents/firedrake-install", line 539, in check_call

    log.debug(subprocess.check_output(arguments, stderr=subprocess.STDOUT, env=os.environ).decode())

  File "/usr/local/Cellar/python@3.9/3.9.9/Frameworks/Python.framework/Versions/3.9/lib/python3.9/subprocess.py", line 424, in check_output

    return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,

  File "/usr/local/Cellar/python@3.9/3.9.9/Frameworks/Python.framework/Versions/3.9/lib/python3.9/subprocess.py", line 528, in run

    raise CalledProcessError(retcode, process.args,

subprocess.CalledProcessError: Command '['make', 'PETSC_DIR=/Users/os3918/Documents/firedrake/src/petsc', 'PETSC_ARCH=default', 'all']' returned non-zero exit status 2.

Install log saved in /Users/os3918/Documents/firedrake-install.log