Hi, I just tried it again, when I attempt to pull the local-par_loop branch I get: eikemueller@138-38-166-201 $ git pull Your configuration specifies to merge with the ref 'local-par_loop' from the remote, but no such ref was fetched. so maybe the remote branch has been deleted? I would also like to add the changes re. linking to additional libraries (LAPACK, BLAS) during the JIT compilation to PyOP2 (so far only a local patch). Can I go ahead and create a branch based on master and then put in a pull request? I now use the PyOP2 master. However, I get the following error when loading firedrake: Python 2.7.8 (default, Jul 13 2014, 17:11:32) [GCC 4.2.1 Compatible Apple LLVM 5.1 (clang-503.0.40)] on darwin Type "help", "copyright", "credits" or "license" for more information.
import firedrake Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/Users/eikemueller/PostDocBath/EllipticSolvers/firedrake/firedrake/__init__.py", line 25, in <module> from pyop2.logger import set_log_level, info_red, info_green, info_blue, log # noqa File "/Users/eikemueller/PostDocBath/EllipticSolvers/PyOP2/pyop2/__init__.py", line 9, in <module> from op2 import * File "/Users/eikemueller/PostDocBath/EllipticSolvers/PyOP2/pyop2/op2.py", line 39, in <module> import base File "/Users/eikemueller/PostDocBath/EllipticSolvers/PyOP2/pyop2/base.py", line 57, in <module> from coffee.base import Node ImportError: No module named base
If I try to import the problematic module, I get:
import base Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/Users/eikemueller/PostDocBath/EllipticSolvers/PyOP2/pyop2/base.py", line 45, in <module> from configuration import configuration File "/Users/eikemueller/PostDocBath/EllipticSolvers/PyOP2/pyop2/configuration.py", line 40, in <module> from exceptions import ConfigurationError ImportError: cannot import name ConfigurationError
Thanks, Eike -- Dr Eike Hermann Mueller Research Associate (PostDoc) Department of Mathematical Sciences University of Bath Bath BA2 7AY, United Kingdom +44 1225 38 5803 e.mueller@bath.ac.uk http://people.bath.ac.uk/em459/
On 15 Dec 2014, at 23:03, Andrew McRae <a.mcrae12@imperial.ac.uk> wrote:
On 15 December 2014 at 23:00, Eike Mueller <e.mueller@bath.ac.uk <mailto:e.mueller@bath.ac.uk>> wrote: Hi Lawrence,
actually, it looks like that patch has already been integrated into the petsc branch you recommend below. Building petsc and petsc4py works fine with that branch. Which pyop2 branch do I want to use? Still local-par_loop? I guess I have to update ffc, ufl etc. at the moment I haven't got firedrake to work yet, it says the pyop2 and firedrake versions are not compatible.
Thanks,
Eike
PS: Are there actually any instructions on the web on obtaining and building coffee? I lost Fabio's email, I googled and figured it out myself now, but the repository is a bit hidden...
It's buried in the PyOP2 installation page <http://www.firedrakeproject.org/obtaining_pyop2.html>, on the Firedrake website. Quite obvious from the table of contents, somewhat less obvious once you scroll further down.
--
Dr Eike Hermann Mueller Research Associate (PostDoc)
Department of Mathematical Sciences University of Bath Bath BA2 7AY, United Kingdom
+44 1225 38 5633 <tel:+44%201225%2038%205633> e.mueller@bath.ac.uk <mailto:e.mueller@bath.ac.uk> <http://people.bath.ac.uk/em459/>http://people.bath.ac.uk/em459/ <http://people.bath.ac.uk/em459/>
On 9 Dec 2014, at 09:31, Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk <mailto:lawrence.mitchell@imperial.ac.uk>> wrote:
On 9 Dec 2014, at 09:13, Eike Mueller <e.mueller@bath.ac.uk <mailto:e.mueller@bath.ac.uk>> wrote:
hanks, I will give it a go. Just looking at my petsc, I'm currently using the master and have the applied the patch below (which you sent me on 11 Oct). Do I still need this, or has this been integrated into the petsc branch you mention?
Yes, I think so.
Lawrence _______________________________________________ firedrake mailing list firedrake@imperial.ac.uk <mailto:firedrake@imperial.ac.uk> https://mailman.ic.ac.uk/mailman/listinfo/firedrake <https://mailman.ic.ac.uk/mailman/listinfo/firedrake>
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