From what I understood you shouldn’t need to do this if you install gusto in the way that Hiroe did because netCDF4 is in the gusto requirements.txt file - isn’t that the point of that file? Did I misunderstand or did something else go wrong?

Jemma

From: firedrake-bounces@imperial.ac.uk <firedrake-bounces@imperial.ac.uk> on behalf of Cotter, Colin J <colin.cotter@imperial.ac.uk>
Sent: 26 September 2018 18:02:39
To: firedrake
Subject: Re: [firedrake] Installation on macOS Sierra
 

Hi Hiroe,

   Sorry, we should put some more detailed installation instructions on the Gusto website. This is an extra dependency of Gusto but not of Firedrake.

You need to type

pip install netCDF4


when inside the Firedrake virtualenv.


all the best

--Colin

From: firedrake-bounces@imperial.ac.uk <firedrake-bounces@imperial.ac.uk> on behalf of Yamazaki, Hiroe <h.yamazaki@imperial.ac.uk>
Sent: 26 September 2018 17:57:14
To: firedrake
Subject: Re: [firedrake] Installation on macOS Sierra
 
Hi David,

That’s a good news. However I still fail the tests on gusto on the same mac which is a problem.
I installed gusto using

python3 ~/firedrake/bin/firedrake-update --install gusto

and it gave some errors (firedrake-update.log attached). I also attached the error messages from the tests on gusto
It look like the problem is related to netCDF but I am not sure how to fix it.

All the best,
Hiroe




> On 26 Sep 2018, at 17:35, Ham, David A <david.ham@imperial.ac.uk> wrote:
>
> Dear Hiroe,
>
> This is a known issue on Mac. The parallel test harness is not compatible with OpenMPI 3.0.0. You can ignore this issue. Firedrake will still work in parallel, it's just the test harness which is broken.
>
> Regards,
>
> David
>
> On 26/09/2018, 17:33, "firedrake-bounces@imperial.ac.uk on behalf of Yamazaki, Hiroe" <firedrake-bounces@imperial.ac.uk on behalf of h.yamazaki@imperial.ac.uk> wrote:
>
>    Dear Firedrakers,
>
>    I am installing firedrake on my macbook Pro with macOS Sierra 10.12.6.
>    With the usual installation procedure (python3 firedrake-install), the installation looks successful (firedrake-install.log attached).
>    However I have got over 200 fails and thousands of warnings in the tests. I have attached some of the error messages (see alltest.log).
>    Do you have any idea how to fix this?
>
>
>    All the best,
>    Hiroe
>
>
>
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