Re: [firedrake] Still error after COFFEE / petsc update

29 Jan 2016

      I get /home/alsgregory/Documents/PhD/Firedrake/firedrake/local/lib/python2.7/site-packages/coffee/__init__.pyc to the initial query.

Then, when I try firedrake-update again (to my recollection I've done that post coffee update) I now get,

---> 20 from firedrake import *
     21 parameters["pyop2_options"]["log_level"] = "WARNING"

/home/alsgregory/Documents/PhD/Firedrake/firedrake/lib/python2.7/site-packages/firedrake/__init__.py in <module>()
     29 from pyop2 import op2                                           # noqa
     30 
---> 31 from firedrake.assemble import *
     32 from firedrake.bcs import *
     33 from firedrake.checkpointing import *

/home/alsgregory/Documents/PhD/Firedrake/firedrake/lib/python2.7/site-packages/firedrake/assemble.py in <module>()
      7 from pyop2.profiling import timed_region, profile
      8 
----> 9 from firedrake import assembly_cache
     10 from firedrake import assemble_expressions
     11 from firedrake import ffc_interface

/home/alsgregory/Documents/PhD/Firedrake/firedrake/lib/python2.7/site-packages/firedrake/assembly_cache.py in <module>()
     39 from pyop2.mpi import MPI, _MPI
     40 
---> 41 from firedrake.parameters import parameters
     42 from firedrake.petsc import PETSc
     43 

/home/alsgregory/Documents/PhD/Firedrake/firedrake/lib/python2.7/site-packages/firedrake/parameters.py in <module>()
      4 from ffc import default_parameters
      5 from pyop2.configuration import configuration
----> 6 from firedrake.citations import Citations
      7 
      8 

/home/alsgregory/Documents/PhD/Firedrake/firedrake/lib/python2.7/site-packages/firedrake/citations.py in <module>()
     86 
     87 # Register the firedrake paper for citations
---> 88 Citations().register("Rathgeber2015")
     89 
     90 # The rest are all registered only when using appropriate functionality.

/home/alsgregory/Documents/PhD/Firedrake/firedrake/lib/python2.7/site-packages/firedrake/citations.py in register(self, key)
     60         if cite is None:
     61             raise KeyError("Did not find a citation for '%s', did you forget to add it?" % key)
---> 62         PETSc.Sys.registerCitation(cite)
     63 
     64     @classmethod

AttributeError: type object 'petsc4py.PETSc.Sys' has no attribute 'registerCitation'

many Thanks,
Alastair

________________________________________
From: firedrake-bounces@imperial.ac.uk <firedrake-bounces@imperial.ac.uk> on behalf of Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk>
Sent: 29 January 2016 10:27
To: firedrake
Subject: Re: [firedrake] Still error after COFFEE / petsc update
...
On 29 Jan 2016, at 10:21, Gregory, Alastair <a.gregory14@imperial.ac.uk> wrote:
Thanks, unfortunately same error.
Hmmm, to assuage my worries, can you do:

python -c "import coffee; print coffee.__file__"

To ensure you're getting the correct coffee in the virtualenv.

I presume, also, that you've run firedrake-update appropriately.

Lawrence