-------------------------------------------------------------------------------- *** attm Job: 2708483.sdb started: 15/02/15 22:31:22 host: mom4 *** *** attm Job: 2708483.sdb started: 15/02/15 22:31:22 host: mom4 *** *** attm Job: 2708483.sdb started: 15/02/15 22:31:22 host: mom4 *** *** attm Job: 2708483.sdb started: 15/02/15 22:31:22 host: mom4 *** -------------------------------------------------------------------------------- declare -x ANACONDADIR="/work/y07/y07/cse/anaconda/1.9.2" declare -x ANACONDA_LIB="/work/y07/y07/cse/anaconda/1.9.2/lib" declare -x ATP_HOME="/opt/cray/atp/1.7.5" declare -x ATP_MRNET_COMM_PATH="/opt/cray/atp/1.7.5/bin/atp_mrnet_commnode_wrapper" declare -x ATP_POST_LINK_OPTS="-Wl,-L/opt/cray/atp/1.7.5/lib/ " declare -x CC="cc" declare -x COLORTERM="1" declare -x CPATH="/work/y07/y07/fdrake/petsc/cray-gnu-shared/include:/work/y07/y07/fdrake/petsc/include" declare -x CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK" declare -x CPU="x86_64" declare -x CRAYOS_VERSION="5.1.29" declare -x CRAYPE_DIR="/opt/cray/craype/2.2.0" declare -x CRAYPE_LINK_TYPE="dynamic" declare -x CRAYPE_NETWORK_TARGET="aries" declare -x CRAYPE_VERSION="2.2.0" declare -x CRAY_ADD_RPATH="yes" declare -x CRAY_ALPS_INCLUDE_OPTS="-I/opt/cray/alps/5.1.1-2.0501.8471.1.1.ari/include" declare -x CRAY_ALPS_POST_LINK_OPTS="-L/opt/cray/alps/5.1.1-2.0501.8471.1.1.ari/lib64" declare -x CRAY_CPU_TARGET="ivybridge" declare -x CRAY_DMAPP_INCLUDE_OPTS="-I/opt/cray/dmapp/7.0.1-1.0501.8315.8.4.ari/include -I/opt/cray/gni-headers/3.0-1.0501.8317.12.1.ari/include " declare -x CRAY_DMAPP_POST_LINK_OPTS="-L/opt/cray/dmapp/7.0.1-1.0501.8315.8.4.ari/lib64" declare -x CRAY_GNI_HEADERS_INCLUDE_OPTS="-I/opt/cray/gni-headers/3.0-1.0501.8317.12.1.ari/include" declare -x CRAY_LD_LIBRARY_PATH="/opt/cray/pmi/5.0.5-1.0000.10300.134.8.ari/lib64:/opt/cray/libsci/13.0.1/GNU/49/sandybridge/lib:/opt/cray/mpt/7.0.3/gni/mpich2-gnu/49/lib:/opt/cray/mpt/7.0.3/gni/mpich2-cray/83/lib:/opt/cray/libsci/13.0.1/CRAY/83/x86_64/lib:/opt/cray/xpmem/0.1-2.0501.48424.3.3.ari/lib64:/opt/cray/dmapp/7.0.1-1.0501.8315.8.4.ari/lib64:/opt/cray/ugni/5.0-1.0501.8253.10.22.ari/lib64:/opt/cray/udreg/2.3.2-1.0501.7914.1.13.ari/lib64:/opt/cray/alps/5.1.1-2.0501.8471.1.1.ari/lib64" declare -x CRAY_LIBSCI_BASE_DIR="/opt/cray/libsci/13.0.1" declare -x CRAY_LIBSCI_DIR="/opt/cray/libsci/13.0.1" declare -x CRAY_LIBSCI_PREFIX_DIR="/opt/cray/libsci/13.0.1/GNU/49/sandybridge" declare -x CRAY_LIBSCI_VERSION="13.0.1" declare -x CRAY_LLM_DIR="/opt/cray/llm/default" declare -x CRAY_MPICH2_BASEDIR="/opt/cray/mpt/7.0.3/gni" declare -x CRAY_MPICH2_DIR="/opt/cray/mpt/7.0.3/gni/mpich2-gnu/49" declare -x CRAY_MPICH2_ROOTDIR="/opt/cray/mpt/7.0.3" declare -x CRAY_MPICH2_VER="7.0.3" declare -x CRAY_PMI_INCLUDE_OPTS="-I/opt/cray/pmi/5.0.5-1.0000.10300.134.8.ari/include" declare -x CRAY_PMI_POST_LINK_OPTS="-L/opt/cray/pmi/5.0.5-1.0000.10300.134.8.ari/lib64" declare -x CRAY_PRE_COMPILE_OPTS="-hnetwork=aries" declare -x CRAY_PRGENVGNU="loaded" declare -x CRAY_SITE_LIST_DIR="/etc/opt/cray/modules" declare -x CRAY_UDREG_INCLUDE_OPTS="-I/opt/cray/udreg/2.3.2-1.0501.7914.1.13.ari/include" declare -x CRAY_UDREG_POST_LINK_OPTS="-L/opt/cray/udreg/2.3.2-1.0501.7914.1.13.ari/lib64" declare -x CRAY_UGNI_INCLUDE_OPTS="-I/opt/cray/ugni/5.0-1.0501.8253.10.22.ari/include" declare -x CRAY_UGNI_POST_LINK_OPTS="-L/opt/cray/ugni/5.0-1.0501.8253.10.22.ari/lib64" declare -x CRAY_XPMEM_INCLUDE_OPTS="-I/opt/cray/xpmem/0.1-2.0501.48424.3.3.ari/include" declare -x CRAY_XPMEM_POST_LINK_OPTS="-L/opt/cray/xpmem/0.1-2.0501.48424.3.3.ari/lib64" declare -x CSHEDIT="emacs" declare -x CVS_RSH="ssh" declare -x CXX="CC" declare -x DMAPP_ABORT_ON_ERROR="1" declare -x ENV="/etc/bash.bashrc" declare -x ENVIRONMENT="BATCH" declare -x F77="ftn" declare -x F90="ftn" declare -x FC="ftn" declare -x FDRAKE_DIR="/work/y07/y07/fdrake" declare -x FFTW_SYSTEM_WISDOM_DIR="/opt/cray/libsci/13.0.1" declare -x FROM_HEADER="" declare -x GCC_PATH="/opt/gcc/4.9.1" declare -x GCC_VERSION="4.9.1" declare -x GMSH_DIR="/work/y07/y07/fdrake/gmsh/2.8.5" declare -x GNU_VERSION="4.9.1" declare -x G_BROKEN_FILENAMES="1" declare -x G_FILENAME_ENCODING="@locale,UTF-8,ISO-8859-15,CP1252" declare -x HISTSIZE="1000" declare -x HOME="/home/n02/n02/attm" declare -x HOST="mom4" declare -x HOSTNAME="mom4" declare -x HOSTTYPE="x86_64" declare -x INFODIR="/usr/local/info:/usr/share/info:/usr/info" declare -x INFOPATH="/opt/gcc/4.9.1/snos/share/info:/usr/local/info:/usr/share/info:/usr/info" declare -x INPUTRC="/etc/inputrc" declare -x JAVA_BINDIR="/usr/lib64/jvm/jre/bin" declare -x JAVA_HOME="/usr/lib64/jvm/jre" declare -x JAVA_ROOT="/usr/lib64/jvm/jre" declare -x JRE_HOME="/usr/lib64/jvm/jre" declare -x LANG="en_US.UTF-8" declare -x LD_LIBRARY_PATH="/opt/intel/composer_xe_2013_sp1.1.106/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.1.106/mkl/lib/intel64:/opt/gcc/4.9.1/snos/lib64" declare -x LD_RUN_PATH="/work/y07/y07/cse/anaconda/1.9.2/lib" declare -x LESS="-M -I" declare -x LESSCLOSE="lessclose.sh %s %s" declare -x LESSKEY="/etc/lesskey.bin" declare -x LESSOPEN="lessopen.sh %s" declare -x LESS_ADVANCED_PREPROCESSOR="no" declare -x LIBRARYMODULES="acml:alps:apprentice2:atp:cray-fftw:cray-libsci:cray-mpich2:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:fftw:ga:hdf5:hdf5-parallel:iobuf:lgdb:libfast:libsci_acc:mpich1:mpich2:mrnet:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:petsc:petsc-complex:pmi:shmem:tpsl:trilinos:xt-atp:xt-lgdb:xt-libsci:xt-mpt:xt-papi:/etc/opt/cray/modules/site_librarymodules" declare -x LIBSCI_BASE_DIR="/opt/cray/libsci/13.0.1" declare -x LIBSCI_VERSION="13.0.1" declare -x LOADEDMODULES="modules/3.2.6.7:nodestat/2.2-1.0501.47138.1.78.ari:sdb/1.0-1.0501.48084.4.48.ari:alps/5.1.1-2.0501.8471.1.1.ari:MySQL/5.0.64-1.0000.7096.23.2:lustre-cray_ari_s/2.4_3.0.80_0.5.1_1.0501.7664.16.1-1.0501.18401.34.1:udreg/2.3.2-1.0501.7914.1.13.ari:ugni/5.0-1.0501.8253.10.22.ari:gni-headers/3.0-1.0501.8317.12.1.ari:dmapp/7.0.1-1.0501.8315.8.4.ari:xpmem/0.1-2.0501.48424.3.3.ari:hss-llm/7.1.0:Base-opts/1.0.2-1.0501.47945.4.2.ari:craype-network-aries:craype/2.2.0:pbs/12.2.401.141761:craype-ivybridge:cray-mpich/7.0.3:packages-archer:cse-compute-defaults/1.0:gcc/4.9.1:cray-libsci/13.0.1:pmi/5.0.5-1.0000.10300.134.8.ari:atp/1.7.5:PrgEnv-gnu/5.1.29:anaconda/1.9.2:gnu-build-env:petsc/shared:fdrake-build-env:fdrake-python-env" declare -x LOGNAME="attm" declare -x LS_COLORS="" declare -x LS_OPTIONS="-N --color=none -T 0" declare -x MACHTYPE="x86_64-suse-linux" declare -x MAIL="/var/spool/mail/attm" declare -x MANPATH="/opt/cray/atp/1.7.5/man:/opt/cray/libsci/13.0.1/man:/opt/cray/mpt/7.0.3/gni/man/mpich2:/opt/gcc/4.9.1/snos/share/man:/opt/cray/craype/2.2.0/man:/opt/pbs/12.2.401.141761/man:/opt/cray/llm/default/man:/opt/cray/lustre-cray_ari_s/2.4_3.0.80_0.5.1_1.0501.7664.16.1-1.0501.18401.34.1/man:/opt/cray/alps/5.1.1-2.0501.8471.1.1.ari/share/man:/opt/modules/3.2.6.7/man:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/opt/intel/mic/share/man" declare -x MINICOM="-c on" declare -x MODULEPATH="/work/y07/y07/fdrake/modules:/opt/cray/craype/default/modulefiles:/opt/cray/ari/modulefiles:/opt/cray/modulefiles:/opt/modulefiles:/opt/modules/packages-archer" declare -x MODULESHOME="/opt/modules/3.2.6.7" declare -x MODULE_VERSION="3.2.6.7" declare -x MODULE_VERSION_STACK="3.2.6.7" declare -x MORE="-sl" declare -x MPICC="cc" declare -x MPICH_ABORT_ON_ERROR="1" declare -x MPICH_DIR="/opt/cray/mpt/7.0.3/gni/mpich2-gnu/49" declare -x MPICXX="CC" declare -x MPIF77="ftn" declare -x MPIF90="ftn" declare -x MPIFC="ftn" declare -x NCPUS="1" declare -x NNTPSERVER="news" declare -x NODE_COUNT="2" declare -x NUM_DEPTH="1" declare -x NUM_PES="48" declare -x NUM_PPN="24" declare -x OLDPWD="/home2/n02/n02/attm" declare -x OMP_NUM_THREADS="1" declare -x OSTYPE="linux" declare -x PAGER="less" declare -x PATH="/work/y07/y07/fdrake/swig-3.0.0/bin:/work/y07/y07/fdrake/gmsh/2.8.5/bin:/work/y07/y07/cse/anaconda/1.9.2/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.ari/bin:/opt/cray/mpt/7.0.3/gni/bin:/opt/gcc/4.9.1/bin:/opt/cray/craype/2.2.0/bin:/opt/pbs/12.2.401.141761/bin:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/xpmem/0.1-2.0501.48424.3.3.ari/bin:/opt/cray/dmapp/7.0.1-1.0501.8315.8.4.ari/bin:/opt/cray/ugni/5.0-1.0501.8253.10.22.ari/bin:/opt/cray/udreg/2.3.2-1.0501.7914.1.13.ari/bin:/opt/cray/lustre-cray_ari_s/2.4_3.0.80_0.5.1_1.0501.7664.16.1-1.0501.18401.34.1/sbin:/opt/cray/lustre-cray_ari_s/2.4_3.0.80_0.5.1_1.0501.7664.16.1-1.0501.18401.34.1/bin:/opt/cray/MySQL/5.0.64-1.0000.7096.23.2/sbin:/opt/cray/MySQL/5.0.64-1.0000.7096.23.2/bin:/opt/cray/alps/5.1.1-2.0501.8471.1.1.ari/sbin:/opt/cray/alps/5.1.1-2.0501.8471.1.1.ari/bin:/opt/cray/sdb/1.0-1.0501.48084.4.48.ari/bin:/opt/cray/nodestat/2.2-1.0501.47138.1.78.ari/bin:/opt/modules/3.2.6.7/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:.:/usr/lib/qt3/bin:/opt/cray/bin" declare -x PBS_ACCOUNT="n02-NEJ005576" declare -x PBS_ENVIRONMENT="PBS_BATCH" declare -x PBS_JOBCOOKIE="0000000011946F9B000000005493C440" declare -x PBS_JOBDIR="/home/n02/n02/attm" declare -x PBS_JOBID="2708483.sdb" declare -x PBS_JOBNAME="traceradv" declare -x PBS_MOMPORT="15003" declare -x PBS_NODEFILE="/var/spool/PBS/aux/2708483.sdb" declare -x PBS_NODENUM="0" declare -x PBS_O_HOME="/home/n02/n02/attm" declare -x PBS_O_HOST="eslogin7-ldap" declare -x PBS_O_LANG="en_GB.UTF-8" declare -x PBS_O_LOGNAME="attm" declare -x PBS_O_MAIL="/var/mail/attm" declare -x PBS_O_PATH="/usr/local/packages/cse/quickstart/1.0:/usr/local/packages/cse/imagemagick/6.8.8-2/bin:/home/y07/y07/cse/nano/2.2.6/bin:/home/y07/y07/cse/tkdiff/4.2:/work/y07/y07/cse/python/2.7.6/bin:/usr/local/packages/cse/serialJobs:/usr/local/packages/cse/bolt/0.6/bin:/usr/local/packages/cse/checkDisk:/usr/local/packages/cse/checkQueue:/usr/local/packages/cse/checkScript:/usr/local/packages/cse/budgets:/opt/cray/mpt/7.0.3/gni/bin:/opt/pbs/12.2.401.141761/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0501.48090.7.46.ari/bin:/opt/cray/alps/5.1.1-2.0501.8507.1.1.ari/sbin:/opt/cray/alps/5.1.1-2.0501.8507.1.1.ari/bin:/opt/cray/dvs/2.4_0.9.0-1.0501.1672.2.122.ari/bin:/opt/cray/csa/3.0.0-1_2.0501.47112.1.91.ari/sbin:/opt/cray/csa/3.0.0-1_2.0501.47112.1.91.ari/bin:/opt/cray/job/1.5.5-0.1_2.0501.48066.2.43.ari/bin:/opt/cray/xpmem/0.1-2.0501.48424.3.3.ari/bin:/opt/cray/dmapp/7.0.1-1.0501.8315.8.4.ari/bin:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.ari/bin:/opt/cray/ugni/5.0-1.0501.8253.10.22.ari/bin:/opt/cray/udreg/2.3.2-1.0501.7914.1.13.ari/bin:/opt/cray/cce/8.3.3/cray-binutils/x86_64-unknown-linux-gnu/bin:/opt/cray/cce/8.3.3/craylibs/x86-64/bin:/opt/cray/cce/8.3.3/cftn/bin:/opt/cray/cce/8.3.3/CC/bin:/opt/cray/craype/2.2.0/bin:/opt/cray/switch/1.0-1.0501.47124.1.93.ari/bin:/opt/cray/eslogin/eswrap/1.1.0-1.010400.915.0/bin:/opt/modules/3.2.6.7/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin:/usr/sbin:.:/usr/lib/qt3/bin:/opt/cray/bin" declare -x PBS_O_QUEUE="standard" declare -x PBS_O_SHELL="/bin/bash" declare -x PBS_O_SYSTEM="Linux" declare -x PBS_O_WORKDIR="/fs2/n02/n02/attm" declare -x PBS_QUEUE="standard" declare -x PBS_TASKNUM="1" declare -x PELOCAL_PRGENV="true" declare -x PETSC_ARCH="cray-gnu-shared" declare -x PETSC_DIR="/work/y07/y07/fdrake/petsc" declare -x PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH="/opt/cray/hdf5/1.8.13/CRAY/83/lib/pkgconfig:/opt/cray/ga/5.1.0.5/CRAY/83/lib/pkgconfig:/opt/cray/netcdf/4.3.2/CRAY/83/lib/pkgconfig:/opt/cray/parallel-netcdf/1.5.0/CRAY/83/lib/pkgconfig:/opt/cray/hdf5-parallel/1.8.13/CRAY/83/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/CRAY/83/lib/pkgconfig" declare -x PE_CXX_PKGCONFIG_LIBS="mpichcxx" declare -x PE_ENV="GNU" declare -x PE_FFTW_DEFAULT_REQUIRED_PRODUCTS="PE_MPICH" declare -x PE_FFTW_DEFAULT_TARGET_haswell="haswell" declare -x PE_FFTW_DEFAULT_TARGET_interlagos="interlagos" declare -x PE_FFTW_DEFAULT_TARGET_sandybridge="sandybridge" declare -x PE_FFTW_DEFAULT_TARGET_x86_64="x86_64" declare -x PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH="/opt/fftw/3.3.4.0/@PE_FFTW_DEFAULT_TARGET@/lib/pkgconfig" declare -x PE_FORTRAN_PKGCONFIG_LIBS="mpichf90" declare -x PE_GA_DEFAULT_FIXED_PRGENV="CRAY INTEL" declare -x PE_GA_DEFAULT_GENCOMPS_GNU="49 48" declare -x PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH="/opt/cray/ga/5.1.0.5/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig" declare -x PE_GA_DEFAULT_VOLATILE_PRGENV="GNU" declare -x PE_HDF5_DEFAULT_FIXED_PRGENV="CRAY INTEL" declare -x PE_HDF5_DEFAULT_GENCOMPS_GNU="49 48" declare -x PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH="/opt/cray/hdf5/1.8.13/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig" declare -x PE_HDF5_DEFAULT_VOLATILE_PRGENV="GNU" declare -x PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV="CRAY INTEL" declare -x PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU="49 48" declare -x PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS="PE_MPICH" declare -x PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH="/opt/cray/hdf5-parallel/1.8.13/@PRGENV@/@PE_HDF5_PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig" declare -x PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV="GNU" declare -x PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH="/opt/cray/mpt/7.0.3/gni/mpich2-intel/140/lib/pkgconfig:/opt/cray/hdf5/1.8.13/INTEL/140/lib/pkgconfig:/opt/cray/ga/5.1.0.5/INTEL/140/lib/pkgconfig:/opt/cray/netcdf/4.3.2/INTEL/140/lib/pkgconfig:/opt/cray/parallel-netcdf/1.5.0/INTEL/140/lib/pkgconfig:/opt/cray/hdf5-parallel/1.8.13/INTEL/140/lib/pkgconfig:/opt/cray/netcdf-hdf5parallel/4.3.2/INTEL/140/lib/pkgconfig" declare -x PE_INTEL_FIXED_PKGCONFIG_PATH="/opt/cray/mpt/7.0.3/gni/mpich2-intel/140/lib/pkgconfig" declare -x PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_haswell="83" declare -x PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_interlagos="83" declare -x PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_sandybridge="83" declare -x PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64="83" declare -x PE_LIBSCI_DEFAULT_GENCOMPS_GNU_haswell="49 48" declare -x PE_LIBSCI_DEFAULT_GENCOMPS_GNU_interlagos="49 48" declare -x PE_LIBSCI_DEFAULT_GENCOMPS_GNU_sandybridge="49 48" declare -x PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64="49 48" declare -x PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_haswell="140" declare -x PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_interlagos="140" declare -x PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_sandybridge="140" declare -x PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64="140" declare -x PE_LIBSCI_DEFAULT_OMP_REQUIRES="" declare -x PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp="_mp" declare -x PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES="PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@" declare -x PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS="PE_MPICH" declare -x PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH="/opt/cray/libsci/13.0.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig" declare -x PE_LIBSCI_DEFAULT_VOLATILE_PRGENV="CRAY GNU INTEL" declare -x PE_LIBSCI_GENCOMPS_CRAY_haswell="83" declare -x PE_LIBSCI_GENCOMPS_CRAY_interlagos="83" declare -x PE_LIBSCI_GENCOMPS_CRAY_sandybridge="83" declare -x PE_LIBSCI_GENCOMPS_CRAY_x86_64="83" declare -x PE_LIBSCI_GENCOMPS_GNU_haswell="49 48" declare -x PE_LIBSCI_GENCOMPS_GNU_interlagos="49 48" declare -x PE_LIBSCI_GENCOMPS_GNU_sandybridge="49 48" declare -x PE_LIBSCI_GENCOMPS_GNU_x86_64="49 48" declare -x PE_LIBSCI_GENCOMPS_INTEL_haswell="140" declare -x PE_LIBSCI_GENCOMPS_INTEL_interlagos="140" declare -x PE_LIBSCI_GENCOMPS_INTEL_sandybridge="140" declare -x PE_LIBSCI_GENCOMPS_INTEL_x86_64="140" declare -x PE_LIBSCI_MODULE_NAME="cray-libsci/13.0.1" declare -x PE_LIBSCI_OMP_REQUIRES="" declare -x PE_LIBSCI_OMP_REQUIRES_openmp="_mp" declare -x PE_LIBSCI_PKGCONFIG_LIBS="libsci_mpi:libsci" declare -x PE_LIBSCI_PKGCONFIG_VARIABLES="PE_LIBSCI_OMP_REQUIRES_@openmp@" declare -x PE_LIBSCI_REQUIRED_PRODUCTS="PE_MPICH" declare -x PE_LIBSCI_VOLATILE_PKGCONFIG_PATH="/opt/cray/libsci/13.0.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig" declare -x PE_LIBSCI_VOLATILE_PRGENV="CRAY GNU INTEL" declare -x PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64="64" declare -x PE_MPICH_DEFAULT_FIXED_PRGENV="INTEL" declare -x PE_MPICH_DEFAULT_GENCOMPS_CRAY="83" declare -x PE_MPICH_DEFAULT_GENCOMPS_GNU="49 48" declare -x PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH="/opt/cray/mpt/7.0.3/gni/mpich2-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig" declare -x PE_MPICH_DEFAULT_VOLATILE_PRGENV="CRAY GNU" declare -x PE_MPICH_DIR_CRAY_DEFAULT64="64" declare -x PE_MPICH_FIXED_PRGENV="INTEL" declare -x PE_MPICH_GENCOMPS_CRAY="83" declare -x PE_MPICH_GENCOMPS_GNU="49 48" declare -x PE_MPICH_MODULE_NAME="cray-mpich" declare -x PE_MPICH_MULTITHREADED_LIBS_multithreaded="_mt" declare -x PE_MPICH_NV_LIBS="" declare -x PE_MPICH_NV_LIBS_nvidia20="-lcudart" declare -x PE_MPICH_NV_LIBS_nvidia35="-lcudart" declare -x PE_MPICH_PKGCONFIG_VARIABLES="PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_MULTITHREADED_LIBS_@multithreaded@" declare -x PE_MPICH_TARGET_VAR_nvidia20="-lcudart" declare -x PE_MPICH_TARGET_VAR_nvidia35="-lcudart" declare -x PE_MPICH_VOLATILE_PKGCONFIG_PATH="/opt/cray/mpt/7.0.3/gni/mpich2-@PRGENV@@PE_MPICH_DIR_DEFAULT64@/@PE_MPICH_GENCOMPS@/lib/pkgconfig" declare -x PE_MPICH_VOLATILE_PRGENV="CRAY GNU" declare -x PE_NETCDF_DEFAULT_FIXED_PRGENV="CRAY INTEL" declare -x PE_NETCDF_DEFAULT_GENCOMPS_GNU="49 48" declare -x PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS="PE_HDF5_PARALLEL PE_MPICH" declare -x PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH="/opt/cray/netcdf/4.3.2/@PRGENV@/@PE_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig" declare -x PE_NETCDF_DEFAULT_VOLATILE_PRGENV="GNU" declare -x PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV="CRAY INTEL" declare -x PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU="49 48" declare -x PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS="PE_HDF5_PARALLEL PE_MPICH" declare -x PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH="/opt/cray/netcdf-hdf5parallel/4.3.2/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig" declare -x PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV="GNU" declare -x PE_PAPI_DEFAULT_ACCEL_LIBS="" declare -x PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35=",-lcupti,-lcudart,-lcuda" declare -x PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES="PE_PAPI_ACCEL_LIBS_@accelerator@" declare -x PE_PAPI_DEFAULT_TARGET_VAR_nvidia35=",-lcupti,-lcudart,-lcuda" declare -x PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV="CRAY INTEL" declare -x PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU="49 48" declare -x PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH="/opt/cray/parallel-netcdf/1.5.0/@PRGENV@/@PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig" declare -x PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV="GNU" declare -x PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell="83" declare -x PE_PETSC_DEFAULT_GENCOMPS_CRAY_interlagos="83" declare -x PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge="83" declare -x PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64="83" declare -x PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell="49 48" declare -x PE_PETSC_DEFAULT_GENCOMPS_GNU_interlagos="49 48" declare -x PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge="49 48" declare -x PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64="49 48" declare -x PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell="140" declare -x PE_PETSC_DEFAULT_GENCOMPS_INTEL_interlagos="140" declare -x PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge="140" declare -x PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64="140" declare -x PE_PETSC_DEFAULT_REQUIRED_PRODUCTS="PE_MPICH:PE_LIBSCI:PE_TPSL" declare -x PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH="/opt/cray/petsc/3.5.1.0/real/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig" declare -x PE_PETSC_DEFAULT_VOLATILE_PRGENV="CRAY GNU INTEL" declare -x PE_PKGCONFIG_DEFAULT_PRODUCTS="PE_MPICH:PE_HDF5:PE_TPSL:PE_GA:PE_NETCDF:PE_PARALLEL_NETCDF:PE_TRILINOS:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_FFTW:PE_LIBSCI:PE_PETSC" declare -x PE_PKGCONFIG_LIBS="AtpSigHandler:libsci_mpi:libsci:mpich" declare -x PE_PKGCONFIG_PRODUCTS="PE_LIBSCI:PE_MPICH" declare -x PE_PKGCONFIG_PRODUCTS_DEFAULT="PE_PAPI" declare -x PE_PRODUCT_LIST="CRAY_PMI:CRAY_LIBSCI:CRAYPE:GNU:GCC:CRAYPE_IVYBRIDGE:CRAY_LLM:CRAY_XPMEM:CRAY_DMAPP:CRAY_UGNI:CRAY_UDREG:CRAY_ALPS" declare -x PE_SMA_DIR_CRAY_DEFAULT64="64" declare -x PE_SMA_DIR_PGI_DEFAULT64="64" declare -x PE_SMA_VOLATILE_PKGCONFIG_PATH="/opt/cray/mpt/7.0.3/gni/sma@PE_SMA_DIR_DEFAULT64@/lib64/pkgconfig" declare -x PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell="83" declare -x PE_TPSL_DEFAULT_GENCOMPS_CRAY_interlagos="83" declare -x PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge="83" declare -x PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64="83" declare -x PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell="49 48" declare -x PE_TPSL_DEFAULT_GENCOMPS_GNU_interlagos="49 48" declare -x PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge="49 48" declare -x PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64="49 48" declare -x PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell="140" declare -x PE_TPSL_DEFAULT_GENCOMPS_INTEL_interlagos="140" declare -x PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge="140" declare -x PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64="140" declare -x PE_TPSL_DEFAULT_REQUIRED_PRODUCTS="PE_MPICH:PE_LIBSCI" declare -x PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH="/opt/cray/tpsl/1.4.1/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig" declare -x PE_TPSL_DEFAULT_VOLATILE_PRGENV="CRAY GNU INTEL" declare -x PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_haswell="83" declare -x PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_interlagos="83" declare -x PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_sandybridge="83" declare -x PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_x86_64="83" declare -x PE_TRILINOS_DEFAULT_GENCOMPS_GNU_haswell="49 48" declare -x PE_TRILINOS_DEFAULT_GENCOMPS_GNU_interlagos="49 48" declare -x PE_TRILINOS_DEFAULT_GENCOMPS_GNU_sandybridge="49 48" declare -x PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64="49 48" declare -x PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_haswell="140" declare -x PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_interlagos="140" declare -x PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_sandybridge="140" declare -x PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_x86_64="140" declare -x PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS="PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL" declare -x PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH="/opt/cray/trilinos/11.8.1.0/@PRGENV@/@PE_TRILINOS_DEFAULT_GENCOMPS@/@PE_TRILINOS_DEFAULT_TARGET@/lib/pkgconfig" declare -x PE_TRILINOS_DEFAULT_VOLATILE_PRGENV="CRAY GNU INTEL" declare -x PKGCONFIG_ENABLED="1" declare -x PKG_CONFIG_PATH="/opt/cray/libsci/13.0.1/GNU/49/sandybridge/lib/pkgconfig:/opt/cray/pmi/5.0.5-1.0000.10300.134.8.ari/lib64/pkgconfig:/opt/cray/craype/2.2.0/pkg-config:/opt/cray/iobuf/2.0.5/lib/pkgconfig:/opt/cray/xpmem/0.1-2.0501.48424.3.3.ari/lib64/pkgconfig:/opt/cray/dmapp/7.0.1-1.0501.8315.8.4.ari/lib64/pkgconfig:/opt/cray/gni-headers/3.0-1.0501.8317.12.1.ari/lib64/pkgconfig:/opt/cray/ugni/5.0-1.0501.8253.10.22.ari/lib64/pkgconfig:/opt/cray/udreg/2.3.2-1.0501.7914.1.13.ari/lib64/pkgconfig:/opt/cray/MySQL/5.0.64-1.0000.7096.23.2/lib64/pkgconfig:/opt/cray/alps/5.1.1-2.0501.8471.1.1.ari/lib64/pkgconfig:/opt/cray/atp/1.7.5/lib/pkgconfig" declare -x PKG_CONFIG_PATH_DEFAULT="/opt/cray/papi/5.3.2/lib64/pkgconfig" declare -x PRGENVMODULES="PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi" declare -x PROFILEREAD="true" declare -x PWD="/fs2/n02/n02/attm" declare -x PYTHONHOME="/work/y07/y07/cse/anaconda/1.9.2" declare -x PYTHONPATH="/work/y07/y07/fdrake/firedrake/lib/python2.7/site-packages:/work/y07/y07/fdrake/PyOP2/lib/python2.7/site-packages:/work/y07/y07/fdrake/coffee/lib/python2.7/site-packages:/work/y07/y07/fdrake/ufl/lib/python2.7/site-packages:/work/y07/y07/fdrake/scientificpython/lib/python2.7/site-packages:/work/y07/y07/fdrake/psutil/lib/python2.7/site-packages:/work/y07/y07/fdrake/mpi4py/lib/python2.7/site-packages:/work/y07/y07/fdrake/instant/lib/python2.7/site-packages:/work/y07/y07/fdrake/fiat/lib/python2.7/site-packages:/work/y07/y07/fdrake/ffc/lib/python2.7/site-packages:/work/y07/y07/fdrake/decorator-3.4.0/lib/python2.7/site-packages:/work/y07/y07/fdrake/petsc/cray-gnu-shared/lib/python2.7/site-packages:/work/y07/y07/cse/anaconda/1.9.2/lib/python2.7/site-packages:/work/y07/y07/cse/anaconda/1.9.2/lib/python2.7:/opt/cray/sdb/1.0-1.0501.48084.4.48.ari/lib64/py" declare -x PYTHONSTARTUP="/etc/pythonstart" declare -x QTDIR="/usr/lib/qt3" declare -x QT_SYSTEM_DIR="/usr/share/desktop-data" declare -x RCLOCAL_BASEOPTS="true" declare -x RCLOCAL_PRGENV="true" declare -x SHELL="/bin/bash" declare -x SHLVL="2" declare -x SHMEM_ABORT_ON_ERROR="1" declare -x TARGETMODULES="craype-abudhabi:craype-abudhabi-cu:craype-accel-nvidia20:craype-accel-nvidia30:craype-accel-nvidia35:craype-barcelona:craype-hugepages128K:craype-hugepages128M:craype-hugepages16M:craype-hugepages256M:craype-hugepages2M:craype-hugepages512K:craype-hugepages512M:craype-hugepages64M:craype-hugepages8M:craype-interlagos:craype-interlagos-cu:craype-istanbul:craype-ivybridge:craype-knc:craype-mc12:craype-mc8:craype-network-aries:craype-network-gemini:craype-network-seastar:craype-sandybridge:craype-shanghai:craype-target-compute_node:craype-target-local_host:craype-target-native:craype-target-petest:craype-xeon:xtpe-barcelona:xtpe-interlagos:xtpe-interlagos-cu:xtpe-istanbul:xtpe-mc12:xtpe-mc8:xtpe-network-gemini:xtpe-network-seastar:xtpe-shanghai:xtpe-target-native:xtpe-xeon:/etc/opt/cray/modules/site_targetmodules" declare -x TMPDIR="/var/tmp/pbs.2708483.sdb" declare -x TOOLMODULES="apprentice:apprentice2:atp:chapel:craypat:ddt:gdb:iobuf:mrnet:papi:perftools:stat:totalview:xt-craypat:xt-lgdb:xt-papi:xt-totalview:/etc/opt/cray/modules/site_toolmodules" declare -x TZ="Europe/London" declare -x USER="attm" declare -x USERMODULES="acml:alps:apprentice2:atp:blcr:cce:chapel:cray-fftw:cray-libsci:cray-mpich2:craypat:craype:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:ddt:fftw:ga:gcc:hdf5:hdf5-parallel:intel:iobuf:java:lgdb:libfast:libsci_acc:mpich1:mrnet:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:pathscale:perftools:petsc:petsc-complex:pgi:pmi:PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:stat:totalview:tpsl:trilinos:xt-asyncpe:xt-craypat:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:xt-totalview:/etc/opt/cray/modules/site_usermodules" declare -x WINDOWMANAGER="" declare -x WORK="/work/n02/n02/attm" declare -x XCURSOR_THEME="crystalwhite" declare -x XDG_CONFIG_DIRS="/etc/xdg" declare -x XDG_DATA_DIRS="/usr/share:/etc/opt/kde3/share:/opt/kde3/share" declare -x XKEYSYMDB="/usr/share/X11/XKeysymDB" declare -x XNLSPATH="/usr/share/X11/nls" declare -x XTOS_VERSION="5.1.29" declare -x XTPE_NETWORK_TARGET="aries" declare -x _LMFILES_="/opt/modulefiles/modules/3.2.6.7:/opt/cray/ari/modulefiles/nodestat/2.2-1.0501.47138.1.78.ari:/opt/cray/ari/modulefiles/sdb/1.0-1.0501.48084.4.48.ari:/opt/cray/ari/modulefiles/alps/5.1.1-2.0501.8471.1.1.ari:/opt/cray/modulefiles/MySQL/5.0.64-1.0000.7096.23.2:/opt/cray/modulefiles/lustre-cray_ari_s/2.4_3.0.80_0.5.1_1.0501.7664.16.1-1.0501.18401.34.1:/opt/cray/ari/modulefiles/udreg/2.3.2-1.0501.7914.1.13.ari:/opt/cray/ari/modulefiles/ugni/5.0-1.0501.8253.10.22.ari:/opt/cray/ari/modulefiles/gni-headers/3.0-1.0501.8317.12.1.ari:/opt/cray/ari/modulefiles/dmapp/7.0.1-1.0501.8315.8.4.ari:/opt/cray/ari/modulefiles/xpmem/0.1-2.0501.48424.3.3.ari:/opt/modulefiles/hss-llm/7.1.0:/opt/modulefiles/Base-opts/1.0.2-1.0501.47945.4.2.ari:/opt/cray/craype/default/modulefiles/craype-network-aries:/opt/cray/modulefiles/craype/2.2.0:/opt/modulefiles/pbs/12.2.401.141761:/opt/cray/craype/default/modulefiles/craype-ivybridge:/opt/cray/modulefiles/cray-mpich/7.0.3:/opt/modulefiles/packages-archer:/opt/modules/packages-archer/cse-compute-defaults/1.0:/opt/modulefiles/gcc/4.9.1:/opt/cray/modulefiles/cray-libsci/13.0.1:/opt/cray/ari/modulefiles/pmi/5.0.5-1.0000.10300.134.8.ari:/opt/cray/modulefiles/atp/1.7.5:/opt/cray/modulefiles/PrgEnv-gnu/5.1.29:/opt/modules/packages-archer/anaconda/1.9.2:/work/y07/y07/fdrake/modules/gnu-build-env:/work/y07/y07/fdrake/modules/petsc/shared:/work/y07/y07/fdrake/modules/fdrake-build-env:/work/y07/y07/fdrake/modules/fdrake-python-env" Imported firedrake 02/15/15 22:32:13 Built base mesh 02/15/15 22:32:15 Built full mesh 02/15/15 22:32:17 Application 12959755 exit codes: 134 Application 12959755 exit signals: Killed Application 12959755 resources: utime ~4s, stime ~33s, Rss ~75100, inblocks ~223896, outblocks ~778 -------------------------------------------------------------------------------- Resources requested: ncpus=48,place=free,walltime=00:05:00 Resources allocated: cpupercent=0,cput=00:00:00,mem=6592kb,ncpus=48,vmem=76932kb,walltime=00:00:56 *** attm Job: 2708483.sdb ended: 15/02/15 22:32:18 queue: standard *** *** attm Job: 2708483.sdb ended: 15/02/15 22:32:18 queue: standard *** *** attm Job: 2708483.sdb ended: 15/02/15 22:32:18 queue: standard *** *** attm Job: 2708483.sdb ended: 15/02/15 22:32:18 queue: standard *** --------------------------------------------------------------------------------