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April 2020

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[FILM-Users 00905] Free bioimage analysis online courses NEUBIAS Academy
by Spenlehauer, Alice H M 06 Apr '20

06 Apr '20

The network of European bioimage analysts (NEUBIAS) Academy is offering free online courses and webinars - https://neubiasacademy.org (see more details in email thread below). Of particular interest, next week on April 14th and 15th there will be two live sessions on the basics of macro creation and scripting in ImageJ/FIJI (register here<https://docs.google.com/forms/d/e/1FAIpQLSdieqTNlxez7VEZN0KW7a9XHAaN1quT-nk…>). This could be a good opportunity for users who want to learn how to: (1) automate and speed up their image analysis workflows; and (2) make their image analysis more reproducible. For those who are interested but unable to attend, NEUBIAS will be recording the course and will be releasing it on the NEUBIAS youtube channel for further viewing. I hope that everyone is keeping healthy. Best Wishes, Alice From: Image Analysis Focused Interest Group of the Royal Microscopical Society <IAFIG-RMS(a)JISCMAIL.AC.UK<mailto:IAFIG-RMS@JISCMAIL.AC.UK>> On Behalf Of Dominic Waithe Sent: 03 April 2020 17:21 To: IAFIG-RMS(a)JISCMAIL.AC.UK<mailto:IAFIG-RMS@JISCMAIL.AC.UK> Subject: [IAFIG] Announcement: Opening of the NEUBIAS Academy This email from dominic.waithe(a)IMM.OX.AC.UK<mailto:dominic.waithe@IMM.OX.AC.UK> originates from outside Imperial. Do not click on links and attachments unless you recognise the sender. If you trust the sender, add them to your safe senders list<https://spam.ic.ac.uk/SpamConsole/Senders.aspx> to disable email stamping for this address. Dear Bioimaging colleagues, We are thrilled to announce the Opening of the NEUBIAS Academy https://neubiasacademy.org NEUBIAS Academy is a new initiative, aimed to provide sustainable material and activities focused on Training in Bioimage Analysis. NEUBIAS Academy capitalizes on the success of NEUBIAS’ 15 Training Schools (2016-2020) that have supported over 400 trainees (Early Career Scientists, Facility Staff and Bioimage Analysts), but could not satisfy the high and increasing demand (almost 1000 applicants). A team of about 20 members will interact with a larger pool of hundreds of trainers, analysts and developers to bring knowledge and bleeding-edge updates to the community. Where do we start? NEUBIAS Academy @ Home: Online events NEUBIAS aims to support the community with a new series of live online events targeting all levels of Bioimage Analysis Technology, with intensive activity to best serve the community during the currently challenging period of confinement: - Live Online Courses will provide interactivity with the audience (e.g. exercises in virtual breakout rooms), - Live Webinars will target a larger audience with specific topics, software tools, theoretical content or critical updates, from introductions to concepts to very advanced implementations. Questions and Answers will be moderated by experts. Webinars will be recorded and made available on Youtube NEUBIAS Channel, and a thread per event will be opened in the image.sc Forum to report Q&As and to welcome further questions/comments. Starting list of confirmed events: 14-15 April: IJ/Fiji Macro Programming, online course. open for Registration ! 21 April: Introduction to Machine Learning and DeepImageJ open for Registration ! 22 April: Bioimage Analysis with Icy open for Registration ! 29 April: Quantitative Pathology and Bioimage Analysis: QuPath v0.2.0 30 April: Advanced Image Processing with MorphoLibJ You’ll find more information on https://neubiasacademy.org Please spread the word On behalf of the NEUBIAS Academy organisation committee ________________________________ To unsubscribe from the IAFIG-RMS list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=IAFIG-RMS&A=1

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[FILM-Users 00904] Tutorial: Guidance for quantitative confocal microscopy
by Bruckbauer, Andreas 01 Apr '20

01 Apr '20

Dear all, I want to highlight the excellent paper by James Jonkman et al. Tutorial: Guidance for quantitative confocal microscopy published yesterday in Nature Protocols: https://www.nature.com/articles/s41596-020-0313-9 It is a very comprehensive guide for confocal microscopy including sample preparation, instrumentation, image acquisition and even statistics, maybe the best ever written on this topic! Please read before using the FILM microscopes, we also included a link on our webpage under Resources/General Information. Best wishes Andreas ---------------------------------------------------- Dr Andreas Bruckbauer FILM facility manager Sir Alexander Fleming Building South Kensington Campus Imperial College London Exhibition Road London, SW7 2AZ SAF 4th floor, open space desk 401 +44 (0)20 7594 2023 a.bruckbauer(a)imperial.ac.uk<mailto:a.bruckbauer@imperial.ac.uk> http://www.imperial.ac.uk/medicine/facility-for-imaging-by-light-microscopy/ ----------------------------------------------------

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